RNA id: TCONS_00057328


Basic Information

Item Value
RNA id TCONS_00057328
length 219
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id XLOC_028584
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12055935 ~ 12056427 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATgttgtttaatgtatttttttttttttacatttataaaaagcaGGTGCTGAAGTTCAGATGGGTTCATTTGTTATCTAGATGGAGAATCAGCAGtcatAAAAGTAATTGCTGTAGGTCAAAtgggtttatttttcttttcttgagGAGCATCTGGATACAGAATCAGCAGGTAATGGATAAATTTAACGCTCAGGTTAtttatactgttaaaaaataa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055446 lncRNA downstream 20375 12034695 ~ 12035560 (-) False XLOC_028583
TCONS_00055440 lncRNA downstream 252538 11787351 ~ 11803397 (-) False XLOC_028580
TCONS_00055441 lncRNA downstream 255524 11788766 ~ 11800411 (-) True XLOC_028580
TCONS_00058118 lncRNA downstream 266354 11758282 ~ 11789581 (-) False XLOC_028580
TCONS_00058117 lncRNA downstream 266354 11758282 ~ 11789581 (-) False XLOC_028580
TCONS_00057329 lncRNA upstream 1381 12057808 ~ 12058631 (-) True XLOC_028585
TCONS_00058119 lncRNA upstream 3557 12059984 ~ 12061389 (-) False XLOC_028586
TCONS_00057330 lncRNA upstream 3766 12060193 ~ 12060718 (-) True XLOC_028586
TCONS_00055450 lncRNA upstream 21905 12078332 ~ 12102025 (-) True XLOC_028587
TCONS_00055453 lncRNA upstream 66367 12122794 ~ 12224631 (-) False XLOC_028589
TCONS_00055445 mRNA downstream 15590 12033873 ~ 12040345 (-) False XLOC_028583
TCONS_00055447 mRNA downstream 15613 12034833 ~ 12040322 (-) True XLOC_028583
TCONS_00055444 mRNA downstream 48531 11813778 ~ 12007404 (-) True XLOC_028582
TCONS_00055442 mRNA downstream 245136 11804675 ~ 11810799 (-) False XLOC_028581
TCONS_00055443 mRNA downstream 245570 11809137 ~ 11810365 (-) True XLOC_028581
TCONS_00055448 mRNA upstream 18349 12074776 ~ 12102025 (-) False XLOC_028587
TCONS_00055449 mRNA upstream 18613 12075040 ~ 12102036 (-) False XLOC_028587
TCONS_00055451 mRNA upstream 45840 12102267 ~ 12106039 (-) False XLOC_028588
TCONS_00055452 mRNA upstream 47405 12103832 ~ 12104421 (-) True XLOC_028588
TCONS_00055456 mRNA upstream 187271 12243698 ~ 12286067 (-) False XLOC_028592
TCONS_00055433 other downstream 447652 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 449080 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055389 other downstream 1394258 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 3468027 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 3914469 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055457 other upstream 218687 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 356992 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 539253 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055473 other upstream 721282 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 850554 12906981 ~ 12914170 (-) True XLOC_028606

Expression Profile

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