RNA id: TCONS_00057329


Basic Information

Item Value
RNA id TCONS_00057329
length 565
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id XLOC_028585
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12057808 ~ 12058631 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aGGTCAGATGCAGGATATCAGATGGGTTCATTGTCTCCCCCTGTGGTGAATCTCGATGCTGAATGGTTACATTTATTGCtcagatatttatatatttcttattatACCACATGCTTATCATTTACTGCATTAATTTATATTGCATAGAATAAAAagagaaacattttattttgaaatacctaatattaatagttaaatgGTCTTCATCGTGTGATTCcagcatctgaaatgtttttgTGTTTCAGTTTTCTCCATCTGATGTAAAATTGATTGTAAATTGTTGTTAAATTGGTTTAAAGTGTTTTCTAATGTAATTTCTATTAACATTTATGTAAGGCAGATGCTGGAGGTCAGATGGGTTCATTTTCTTCCCCTTGAGGAGCACCTGAAAACAGAATCAGaGGTCAGAATCAGATGCAGGATATCAGATGGGTTTATTGTCTCCCCCCTGTGGAGAATCTGGATGCTGAATGGTTACATTTATATTAcgtttaatatatatgttttaattttacattattctTATCATTTAGTGCATTCATTTATATTGTGTGGGATAAAATag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057328 lncRNA downstream 1381 12055935 ~ 12056427 (-) True XLOC_028584
TCONS_00055446 lncRNA downstream 22248 12034695 ~ 12035560 (-) False XLOC_028583
TCONS_00055440 lncRNA downstream 254411 11787351 ~ 11803397 (-) False XLOC_028580
TCONS_00055441 lncRNA downstream 257397 11788766 ~ 11800411 (-) True XLOC_028580
TCONS_00058117 lncRNA downstream 268227 11758282 ~ 11789581 (-) False XLOC_028580
TCONS_00058119 lncRNA upstream 1353 12059984 ~ 12061389 (-) False XLOC_028586
TCONS_00057330 lncRNA upstream 1562 12060193 ~ 12060718 (-) True XLOC_028586
TCONS_00055450 lncRNA upstream 19701 12078332 ~ 12102025 (-) True XLOC_028587
TCONS_00055453 lncRNA upstream 64163 12122794 ~ 12224631 (-) False XLOC_028589
TCONS_00055454 lncRNA upstream 111408 12170039 ~ 12224796 (-) False XLOC_028589
TCONS_00055445 mRNA downstream 17463 12033873 ~ 12040345 (-) False XLOC_028583
TCONS_00055447 mRNA downstream 17486 12034833 ~ 12040322 (-) True XLOC_028583
TCONS_00055444 mRNA downstream 50404 11813778 ~ 12007404 (-) True XLOC_028582
TCONS_00055442 mRNA downstream 247009 11804675 ~ 11810799 (-) False XLOC_028581
TCONS_00055443 mRNA downstream 247443 11809137 ~ 11810365 (-) True XLOC_028581
TCONS_00055448 mRNA upstream 16145 12074776 ~ 12102025 (-) False XLOC_028587
TCONS_00055449 mRNA upstream 16409 12075040 ~ 12102036 (-) False XLOC_028587
TCONS_00055451 mRNA upstream 43636 12102267 ~ 12106039 (-) False XLOC_028588
TCONS_00055452 mRNA upstream 45201 12103832 ~ 12104421 (-) True XLOC_028588
TCONS_00055456 mRNA upstream 185067 12243698 ~ 12286067 (-) False XLOC_028592
TCONS_00055433 other downstream 449525 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 450953 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055389 other downstream 1396131 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 3469900 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 3916342 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055457 other upstream 216483 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 354788 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 537049 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055473 other upstream 719078 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 848350 12906981 ~ 12914170 (-) True XLOC_028606

Expression Profile

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