RNA id: NM_001160492.1



Basic Information


Item Value
RNA id NM_001160492.1
length 1320
RNA type mRNA
GC content 0.46
exon number 6
gene id nilt2
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31679423 ~ 31694153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GACACACTCACTCTCAGGGGGGTTCTCATACACACTGCAGGAGCAGACCTTCCTGTACTGGGGTGGTAACTGGACATATAAGTATTGAGGGGACTGTAGTAAACAGGGTGTACAGGGTCTAAAGAGACTTGAACTAGCTGGGAGCCACAAGTCATCATGGTTAACCTGCTGGTCCTCACACTGAAGGTTGTCCTCCTCTTAGCTgctgtgtggagtgtgtgttcagCAGAGTTGATCACAGTGGAAGGATATGAGGGGGGCAAGGCAGAGATCAGATGCCCTTAtaaagaggagtggaggagccAACAGAAGTACCTCTGCAAAGGGGATTGTTctgtttttaataaagacaaagTTATTAAGACTGAGGCAGGGGAAAACAGTGCTTCTAACGGGAGATACTCGCTGAAGGACAACAGAGAAGAAAGTGTCTTCATTGTGACAATCACCAACCTGACGTTAAATGATGCTGGGAGATACTGGTGTGGAGTGGACAAATGGGGACAAGATAACTACATTAAAGTGAACCTTGAAGTCTCTGAAGCAAAACCAACAATCACCACCAAAACAGAACCTACTACAACCGCTTCAGACCCTGGTTCACCAACTTCATCATCCTTAGCCATCTCACCACCGTCATCCATCTCATCAACGCACAATGGATCTGgAGCATCAGTGATCATCATAGTATCTATGAGTCTGGTTACATTGCTGCTTGTAGTCGGTCTGCTTATAGTCTACAGATGGAAATGCAACAAGAAAACAGCTGTCTCCCCTGCATCGACGGTGAACACTGGGATCAACagagagGGTTGTGATGGTGACTATGAGGAAATAAATGAACAACCCCTACATTCCAACATCTACGCCAACTTACCCACAAGCCCCTCTGAATCTCAACTATGCCGGTCTCAACTTCCACAAGGACCCCAGCTGCCCCAATGAAGCCAGTGCTGTCATTTTAAGAGGGCACTTCTTCTGGTGATGCCACTCTCAACGTTGGTCAAAACCCTACCTAGTCCTCCCATCTACTCCACAGTCCGCAAACCCAGAAACACCTGAGTCACTGTCAACCAATCAGAAGGGACATACACACACTGGCAACCAATCACAGTGACCTGTTATTAACTATGTGTGCCACCTCTTGAATGTTGAGATTTAATTTGAGCAAACATCTGCATAATCTGCTTTATGTCCTCAATCAGATGTGCTACTTTGACTTCTGTCTTTCATGTCTCTGCTCACCTTGTCTTAATGTTTAGGTCACTTAGGCCTAATTTGCATGTTAATATCTAAGTAAATATTGGCTCACTATATGCA

Function


GO: NA

KEGG:

id description
K16663 CD300LG, NEPMUCIN; CMRF35-like molecule 9

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2433534 lncRNA downstream 9636 31668715 ~ 31669787 (-) True G2128418
TU2433513 lncRNA downstream 35960 31638710 ~ 31643463 (-) False G2128399
TU2433514 lncRNA downstream 35960 31638710 ~ 31643463 (-) False G2128399
TU2433512 lncRNA downstream 35960 31640297 ~ 31643463 (-) True G2128399
TU2433486 lncRNA downstream 59274 31619740 ~ 31620149 (-) True G2128386
TU2433552 lncRNA upstream 16137 31710290 ~ 31761665 (-) False LOC110508968
TU2433554 lncRNA upstream 25988 31720141 ~ 31723636 (-) True G2128436
TU2433559 lncRNA upstream 48842 31742995 ~ 31749753 (-) True G2128440
TU2433656 lncRNA upstream 77670 31771823 ~ 31772793 (-) True G2128522
TU2433658 lncRNA upstream 79268 31773421 ~ 31773659 (-) True G2128524
XM_021589895.2 mRNA downstream 95227 31576878 ~ 31584196 (-) True thap4
trnav-aac-156 mRNA downstream 118625 31560726 ~ 31560798 (-) True trnav-aac-156
XM_036966526.1 mRNA downstream 119044 31542758 ~ 31560379 (-) False stk25b
XM_036966527.1 mRNA downstream 119044 31542758 ~ 31560379 (-) False stk25b
trnap-ugg-71 mRNA downstream 157851 31521501 ~ 31521572 (-) True trnap-ugg-71
XM_036966696.1 mRNA upstream 14514 31708667 ~ 31715814 (-) False LOC110508968
NM_001160493.1 mRNA upstream 24536 31718689 ~ 31763048 (-) False nilt3
XM_021588580.2 mRNA upstream 57270 31751423 ~ 31763088 (-) True nilt3
XM_036966643.1 mRNA upstream 127989 31822142 ~ 31859100 (-) False LOC110508970
XM_036966644.1 mRNA upstream 127989 31822142 ~ 31859100 (-) False LOC110508970
TU2433312 other downstream 356059 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 356059 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 358800 31319283 ~ 31320623 (-) False G2128242
TU2433286 other downstream 434731 31244091 ~ 31244692 (-) True G2128216
TU2432521 other downstream 972878 30705085 ~ 30706545 (-) True LOC110508928
TU2433533 other upstream 17455 31711608 ~ 31737492 (-) True LOC110508968
TU2433711 other upstream 188562 31882715 ~ 31883140 (-) True G2128568
TU2434105 other upstream 328905 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 328905 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 367896 32062049 ~ 32165022 (-) False asip2b

Expression Profile