RNA id: XM_036966696.1


Basic Information

Item Value
RNA id XM_036966696.1
length 3815
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110508968
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31708667 ~ 31761665 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acttagagtGGTTCTCATACACACTGCAGGAGCAGACCTTCCTGTACTGGGGTGGTAACTGGACGTAGAAGTATTGAGGGGACTGTAGTAAACAGGGTGTACAGGGTCTAAAGAGACTTGAACTAGCTGGGAGCCACAAGTCATCATGGTTATCCTGCTGGTCCTCACACTGAAGGTTGTCCTCCTCTTAGCTgctgtgtggagtgtgtgttcagCAGAGTTGATCACAGTGGAAGGATATGAGGGGGGCAAGGCAGAGATCAGATGCCCCtatagagaggagtggaggagccaCCAGAAGTACCTCTGTAAAGGGGATTGTCCTGTTTTGAATAAAAACAAAGTTATTAAAACTGAGACAGGGAAAAACAGTGCCTCTAACGGGAGATACTCGCTGAAGGACAACAGAGAGGAAAGTGTCTTCATTGTGACAATCACCAAACTGATGATTAACGATGCTGGGAAATACTGGTGTGGAGTGACGAATTCATTGGCAGATGACTACACCGAAGTCAACCTTACAGTCTCTAGAGGTTCACCAACGCTATCATCCTTAGCCACCTCcatctcatcatcatcatcatccatcTCTCAACTATCATCCATctcaacaccatcatccatctCATCATCAACACAAAATGGATTTGTGGTCATCATAGTATCTGGGACTCTGGTTATGCTGCTATTGGTGCTTGTGGTCAGCCTGCTCATAGTCTATAGATGGAAGTTCAACAAGGAAACAGCTGGCTCCTCAGCACCCAGGGTGAACACAGACACTCGGATCAAcatagagggttgtcatggtgatggtCACTATGAAGAAATAAAGGACCGCCCCCTACCGTCCAGTTCAGGTGGTgtgaccaccaccaccatctactcCACTGCCAACTTACCCACAGGCCGCTCTGACTTCCTCAACTACGCCAGTGTCAACTTCCACAAGATCCCCAGCTGCCCCAATGAGGCCACTGCCGCCATCGCTAAAAAGGGTACTTTTTCTGGTGACTATGCCACCGTCAACATAAGTCAAAACCCTGCCTACTCTACTGTCATTCATCCacacagctcctcctcctcctctactccacaGTGAGCAAATCCAGAGACACCTGAGTCACTGACAACCAATCACAAGGGAGAAAAAACACACTGGCAACCAATCACAAGAAACATGTCATGAACTACGTTTGCCACTAACAGCCTCTTGAACATTGAGCTCTGTTTTTAGCTGACAGCTAGATAATGTGCTTCATGTCCTCACAATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCGTGATATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCAGATGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCACCAGATGTGTTTCCCAGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCAGATGTTTCCCTGACTTCTCTCTTCCAGATGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCAGATGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCAGATGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCAGATGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTACATCAGATGTGTTTCCCAGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCAGATGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGtgcttccctgatgtctctctTCAACTTGTCTTCATGTCATTTAATTGCATGTTAATATCTGCAGATAAATATTGTCTCACTATTTGGCAAGCACTTAAAAAGGTATCACACCTTTTGACCAAGGCATTATAACTGTCTATTAACtgtgttttttttacacatttgtaAATGATTAAATAAGCATTAATGATGTCTTGATAAACTCCTGATAAAGGGTGCCTTTAAAAACAGCCCTTTTAGCTTGGCCTTTAACCAGTGATTGTTTTAGACgtcctgtgtgttttatgttcTTTAATTTATCCTTTTTACTGCTTCCTGTTTGCTTCTACTTTTTCATTTGATTGTTTTATTGTGAATTGTGTTGCGATTGTAAATGCAATTTAAATTAAAGGGGAAGTGCAGTTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433534 lncRNA downstream 38880 31668715 ~ 31669787 (-) True G2128418
TU2433513 lncRNA downstream 65204 31638710 ~ 31643463 (-) False G2128399
TU2433514 lncRNA downstream 65204 31638710 ~ 31643463 (-) False G2128399
TU2433512 lncRNA downstream 65204 31640297 ~ 31643463 (-) True G2128399
TU2433486 lncRNA downstream 88518 31619740 ~ 31620149 (-) True G2128386
TU2433554 lncRNA upstream 4327 31720141 ~ 31723636 (-) True G2128436
TU2433559 lncRNA upstream 27181 31742995 ~ 31749753 (-) True G2128440
TU2433656 lncRNA upstream 56009 31771823 ~ 31772793 (-) True G2128522
TU2433658 lncRNA upstream 57607 31773421 ~ 31773659 (-) True G2128524
TU2433673 lncRNA upstream 79619 31795433 ~ 31801315 (-) True G2128536
NM_001160492.1 mRNA downstream 14514 31679423 ~ 31694153 (-) True nilt2
XM_021589895.2 mRNA downstream 124471 31576878 ~ 31584196 (-) True thap4
trnav-aac-156 mRNA downstream 147869 31560726 ~ 31560798 (-) True trnav-aac-156
XM_036966526.1 mRNA downstream 148288 31542758 ~ 31560379 (-) False stk25b
XM_036966527.1 mRNA downstream 148288 31542758 ~ 31560379 (-) False stk25b
NM_001160493.1 mRNA upstream 2875 31718689 ~ 31763048 (-) False nilt3
XM_021588580.2 mRNA upstream 35609 31751423 ~ 31763088 (-) True nilt3
XM_036966643.1 mRNA upstream 106328 31822142 ~ 31859100 (-) False LOC110508970
XM_036966644.1 mRNA upstream 106328 31822142 ~ 31859100 (-) False LOC110508970
XM_036966646.1 mRNA upstream 106328 31822142 ~ 31859100 (-) False LOC110508970
TU2433312 other downstream 385303 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 385303 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 388044 31319283 ~ 31320623 (-) False G2128242
TU2433286 other downstream 463975 31244091 ~ 31244692 (-) True G2128216
TU2432521 other downstream 1002122 30705085 ~ 30706545 (-) True LOC110508928
TU2433711 other upstream 166901 31882715 ~ 31883140 (-) True G2128568
TU2434105 other upstream 307244 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 307244 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 346235 32062049 ~ 32165022 (-) False asip2b
TU2434159 other upstream 441218 32157032 ~ 32165022 (-) False asip2b

Expression Profile