RNA id: TU2433533


Basic Information

Item Value
RNA id TU2433533
length 531
RNA type TUCP
GC content 0.50
exon number 5
gene id LOC110508968
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31708667 ~ 31761665 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTTCTCATGCACACTGCAGGAGCAGACCTTCCTGTACTGGGGGGGTACCTGGACGTAGAGGTATTGAGGGTACTGGAGTAAACAGGATGTACAGGGTCTAAAGAGACTTGAACTAGCTGGGAGCCACAAGTCATCATGGTTATCCTGCTGGTCCTCACACTGAAGGTTGTCCTCCTCTTAGGATGACAAAGGGGTCAGAGTCTTCATTGTGACCATCACCAACCTGATGTCAGATGATGCTGGAACATACTGGTGTGGAGTGGAACGATTTGGACTGGACCCTGAAGTGTATGGAGATACATCAGTGGTCATCATAGTATCTGGGACTCAGGTCATGCTGCTATTGGTGCTTGTGGTCAGCCTGTTCATAGTCTATAGATGGAAATGCAACAAGGAAACAGCTGGCTCCTCAGCACCCAGGGTGAACACAGACACTCGGATCAAcatagagggttgtcatggtgatggtCACTATGAAGAAATAAAGGACCGCCCCCTACCGTCCAGTTCAGGTGGTgtgaccaccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433534 lncRNA downstream 41821 31668715 ~ 31669787 (-) True G2128418
TU2433513 lncRNA downstream 68145 31638710 ~ 31643463 (-) False G2128399
TU2433514 lncRNA downstream 68145 31638710 ~ 31643463 (-) False G2128399
TU2433512 lncRNA downstream 68145 31640297 ~ 31643463 (-) True G2128399
TU2433486 lncRNA downstream 91459 31619740 ~ 31620149 (-) True G2128386
TU2433559 lncRNA upstream 5503 31742995 ~ 31749753 (-) True G2128440
TU2433656 lncRNA upstream 34331 31771823 ~ 31772793 (-) True G2128522
TU2433658 lncRNA upstream 35929 31773421 ~ 31773659 (-) True G2128524
TU2433673 lncRNA upstream 57941 31795433 ~ 31801315 (-) True G2128536
TU2433699 lncRNA upstream 139900 31877392 ~ 31879509 (-) True G2128556
NM_001160492.1 mRNA downstream 17455 31679423 ~ 31694153 (-) True nilt2
XM_021589895.2 mRNA downstream 127412 31576878 ~ 31584196 (-) True thap4
trnav-aac-156 mRNA downstream 150810 31560726 ~ 31560798 (-) True trnav-aac-156
XM_036966526.1 mRNA downstream 151229 31542758 ~ 31560379 (-) False stk25b
XM_036966527.1 mRNA downstream 151229 31542758 ~ 31560379 (-) False stk25b
XM_021588580.2 mRNA upstream 13931 31751423 ~ 31763088 (-) True nilt3
XM_036966643.1 mRNA upstream 84650 31822142 ~ 31859100 (-) False LOC110508970
XM_036966644.1 mRNA upstream 84650 31822142 ~ 31859100 (-) False LOC110508970
XM_036966646.1 mRNA upstream 84650 31822142 ~ 31859100 (-) False LOC110508970
XM_036966647.1 mRNA upstream 84650 31822142 ~ 31859100 (-) True LOC110508970
TU2433312 other downstream 388244 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 388244 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 390985 31319283 ~ 31320623 (-) False G2128242
TU2433286 other downstream 466916 31244091 ~ 31244692 (-) True G2128216
TU2432521 other downstream 1005063 30705085 ~ 30706545 (-) True LOC110508928
TU2433711 other upstream 145223 31882715 ~ 31883140 (-) True G2128568
TU2434105 other upstream 285566 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 285566 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 324557 32062049 ~ 32165022 (-) False asip2b
TU2434159 other upstream 419540 32157032 ~ 32165022 (-) False asip2b

Expression Profile