RNA id: NM_001160493.1


Basic Information

Item Value
RNA id NM_001160493.1
length 1475
RNA type mRNA
GC content 0.47
exon number 8
gene id nilt3
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31718689 ~ 31763088 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTAACTGGCTGGTAACTGGACATAGAAGTATTGAGGGGACTGGAGTAAACAGGGTTTACAGGGTCTAAAGAGACTTGAACTAGCTGGGAGCCACAAGTCATCATGGTTATCCTGCTGGTCCTCACACGGAAGGTTGTCCTCCTCTTAGCTGCTATGTGGAGTGTGTGTTCAGCAGAGTTGATCACAGTGGAAAGATATAAGGGAGGCAAGGCAGAGATCAGATGCCCCtatagagaggagtggaggagccaCCAGAAGTACATATGCAAAGGCAGCAAAATGGAGTGTATAACATTTTTGGGAGACAATGATATTGAGACTGAGGATGAAGAACGAAGCTCTAAATGGAGATACTCCCTATATGACGACAAAGGGGTCAGAGTCTTCATTGTGACCATCACCAACCTGATGTCAGATGATGCTGGAACATACTGGTGTGGAGTGAAACGATTTGGACTGGACCCTGAAGTGTATGGAGATTGGTGTTGTGAAAACCCAGCTGAAGTGACAGGCTCTGAAGAAGTGACAGGCTATGAAGAACGGTCAGTCTCCATCCATTGTATGTATAATGAAAAAAATGAAGACAATGAGAAATACTTCTGCAAAGCGAATACACTATCTAAGTGTGTAGTTGATGTAAAAGTGACAACAACCAAAAGCCAGAACGGGAGGTTCTCACTGTTCGACAACAGGACAGCCGGAGCATTCACCGTGACCATCACCAGACTAACCCAAGAGGATGCTGGGAGATATCTCTGTGGTGTACAGAACAACCACACAACCAATACCCTGTCAGCAGTTCAGCTTGTTATCAAGATTTCACCAACTTTATCATCACCACCTATTGCCACCTCCGTCTCACCATCATCCGTGTCATCACCATCATCCATCTTAACATCAACACACAACAGTTCTGATACATCAGTGGTCATCATAGTATCTGGGACTCTGGTCATGCTGCTATTGGTGCTTGTAGTCAGCCTGCTCATAGTCTATAGATGGAAATTCAACAAGgaaacagCTGACTCCTCAGCACCCAGGGTGAACACAGACACTGGGATCAACagagaggtcagtggttgtcatggtgatggtGACTATGAGGAGATAGAGGACTGCCCCCTACAGTCCAGTTCAGGTGGTGAGACCACCACCATCTACGCCACCGCCAACTTACCCACAAGAACCTCTGACTCTCTCAACTACGCCAACGTCAACTTCCACAAGGACCCCAGCTGCCCCAATGAGGCCACTGTCGCCATCGCTAAAGAGGGCACTTCTCCTGGTTACTATGCCACCGTCAACATTGGTCAAAGCCCCGCCTACTCTACTGTCAATCATCCACACAGCACCTCTGAGGCTCCTCCCATTTACTATACAGTCAGCAAACCCAGAGACCTCTGAGTCACTGACAACCAATCACAAGGGACATATTCACACTGGCAACAAATCATAAGTTATATGttattaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433534 lncRNA downstream 48902 31668715 ~ 31669787 (-) True G2128418
TU2433513 lncRNA downstream 75226 31638710 ~ 31643463 (-) False G2128399
TU2433514 lncRNA downstream 75226 31638710 ~ 31643463 (-) False G2128399
TU2433512 lncRNA downstream 75226 31640297 ~ 31643463 (-) True G2128399
TU2433486 lncRNA downstream 98540 31619740 ~ 31620149 (-) True G2128386
TU2433656 lncRNA upstream 8775 31771823 ~ 31772793 (-) True G2128522
TU2433658 lncRNA upstream 10373 31773421 ~ 31773659 (-) True G2128524
TU2433673 lncRNA upstream 32385 31795433 ~ 31801315 (-) True G2128536
TU2433699 lncRNA upstream 114344 31877392 ~ 31879509 (-) True G2128556
TU2433712 lncRNA upstream 120531 31883579 ~ 31884197 (-) True G2128569
XM_036966696.1 mRNA downstream 2875 31708667 ~ 31715814 (-) False LOC110508968
NM_001160492.1 mRNA downstream 24536 31679423 ~ 31694153 (-) True nilt2
XM_021589895.2 mRNA downstream 134493 31576878 ~ 31584196 (-) True thap4
trnav-aac-156 mRNA downstream 157891 31560726 ~ 31560798 (-) True trnav-aac-156
XM_036966526.1 mRNA downstream 158310 31542758 ~ 31560379 (-) False stk25b
XM_036966643.1 mRNA upstream 59094 31822142 ~ 31859100 (-) False LOC110508970
XM_036966644.1 mRNA upstream 59094 31822142 ~ 31859100 (-) False LOC110508970
XM_036966646.1 mRNA upstream 59094 31822142 ~ 31859100 (-) False LOC110508970
XM_036966647.1 mRNA upstream 59094 31822142 ~ 31859100 (-) True LOC110508970
XM_021589911.2 mRNA upstream 189151 31952199 ~ 31954935 (-) True LOC110508975
TU2433312 other downstream 395325 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 395325 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 398066 31319283 ~ 31320623 (-) False G2128242
TU2433286 other downstream 473997 31244091 ~ 31244692 (-) True G2128216
TU2432521 other downstream 1012144 30705085 ~ 30706545 (-) True LOC110508928
TU2433711 other upstream 119667 31882715 ~ 31883140 (-) True G2128568
TU2434105 other upstream 260010 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 260010 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 299001 32062049 ~ 32165022 (-) False asip2b
TU2434159 other upstream 393984 32157032 ~ 32165022 (-) False asip2b

Expression Profile