RNA id: XM_021588580.2


Basic Information

Item Value
RNA id XM_021588580.2
length 1427
RNA type mRNA
GC content 0.47
exon number 7
gene id nilt3
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31718689 ~ 31763088 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcagaGTGGTTCTCATACACACTGCAGGAGCAGACCTTCCTGTAACTGGCTGGTAACTGGACATAGAAGTATTGAGGGGACTGGAGTAAACAGGGTTTACAGGGTCTAAAGAGACTTGAACTAGCTGGGAGCCACAAGTCATCATGGTTATCCTGCTGGTCCTCACACGGAAGGTTGTCCTCCTCTTAGCTGCTATGTGGAGTGTGTGTTCAGCAGAGTTGATCACAGTGGAAAGATATAAGGGAGGCAAGGCAGAGATCAGATGCCCCtatagagaggagtggaggagccaCCAGAAGTACATATGCAAAGGCAGCAAAATGGAGTGTATAACATTTTTGGGAGACAATGATATTGAGACTGAGGATGAAGAACGAAGCTCTAAATGGAGATACTCCCTATATGACGACAAAGGGGTCAGAGTCTTCATTGTGACCATCACCAACCTGATGTCAGATGATGCTGGAACATACTGGTGTGGAGTGAAACGATTTGGACTGGACCCTGAAGTGTATGGAGATTGGTGTTGTGAAAACCCAGCTGAAGTGACAGGCTCTGAAGAAGTGACAGGCTATGAAGAACGGTCAGTCTCCATCCATTGTATGTATAATGAAAAAAATGAAGACAATGAGAAATACTTCTGCAAAGCGAATACACTATCTAAGTGTGTAGTTGATGTAAAAGTGACAACAACCAAAAGCCAGAACGGGAGGTTCTCACTGTTCGACAACAGGACAGCCGGAGCATTCACCGTGACCATCACCAGACTAACCCAAGAGGATGCTGGGAGATATCTCTGTGGTGTACAGAACAACCACACAACCAATACCCTGTCAGCAGTTCAGCTTGTTATCAAGATTTCACCAACTTTATCATCACCACCTATTGCCACCTCCGTCTCACCATCATCCGTGTCATCACCATCATCCATCTTAACATCAACACACAACAGTTCTGATACATCAGTGGTCATCATAGTATCTGGGACTCTGGTCATGCTGCTATTGGTGCTTGTAGTCAGCCTGCTCATAGTCTATAGATGGAAATTCAACAAGgaaacagCTGACTCCTCAGCACCCAGGGTGAACACAGACACTGGGATCAACagagagggttgtcatggtgatggtGACTATGAGGAGATAGAGGACTGCCCCCTACAGTCCAGTTCAGGTGGTGAGACCACCACCATCTACGCCACCGCCAACTTACCCACAAGAACCTCTGACTCTCTCAACTACTACGTCGCCATCGCTAAAGAGGGCACTTCTCCTGGTTACTTTGCCACTGTCAACATTGGTCAAAGCCCCGCCTACTCTACTGTCAATCATCCACACAGCACCTCTGAGGCTCCTCCCATCTATTATACAGTCAGCAAACCCAGAGATGCCTGAGTCACTGACAACCAATCACAAGGGACATATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433559 lncRNA downstream 1670 31742995 ~ 31749753 (-) True G2128440
TU2433543 lncRNA downstream 15878 31684193 ~ 31735545 (-) False G2128426
TU2433542 lncRNA downstream 20513 31681262 ~ 31730910 (-) False G2128426
TU2433544 lncRNA downstream 20513 31684193 ~ 31730910 (-) True G2128426
TU2433554 lncRNA downstream 27787 31720141 ~ 31723636 (-) True G2128436
TU2433656 lncRNA upstream 8735 31771823 ~ 31772793 (-) True G2128522
TU2433658 lncRNA upstream 10333 31773421 ~ 31773659 (-) True G2128524
TU2433673 lncRNA upstream 32345 31795433 ~ 31801315 (-) True G2128536
TU2433699 lncRNA upstream 114304 31877392 ~ 31879509 (-) True G2128556
TU2433712 lncRNA upstream 120491 31883579 ~ 31884197 (-) True G2128569
XM_036966696.1 mRNA downstream 35609 31708667 ~ 31715814 (-) False LOC110508968
NM_001160492.1 mRNA downstream 57270 31679423 ~ 31694153 (-) True nilt2
XM_021589895.2 mRNA downstream 167227 31576878 ~ 31584196 (-) True thap4
trnav-aac-156 mRNA downstream 190625 31560726 ~ 31560798 (-) True trnav-aac-156
XM_036966527.1 mRNA downstream 191044 31542758 ~ 31560379 (-) False stk25b
XM_036966643.1 mRNA upstream 59054 31822142 ~ 31859100 (-) False LOC110508970
XM_036966644.1 mRNA upstream 59054 31822142 ~ 31859100 (-) False LOC110508970
XM_036966646.1 mRNA upstream 59054 31822142 ~ 31859100 (-) False LOC110508970
XM_036966647.1 mRNA upstream 59054 31822142 ~ 31859100 (-) True LOC110508970
XM_021589911.2 mRNA upstream 189111 31952199 ~ 31954935 (-) True LOC110508975
TU2433533 other downstream 13931 31711608 ~ 31737492 (-) True LOC110508968
TU2433312 other downstream 428059 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 428059 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 430800 31319283 ~ 31320623 (-) False G2128242
TU2433286 other downstream 506731 31244091 ~ 31244692 (-) True G2128216
TU2433711 other upstream 119627 31882715 ~ 31883140 (-) True G2128568
TU2434105 other upstream 259970 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 259970 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 298961 32062049 ~ 32165022 (-) False asip2b
TU2434159 other upstream 393944 32157032 ~ 32165022 (-) False asip2b

Expression Profile