RNA id: TCONS_00055449


Basic Information

Item Value
RNA id TCONS_00055449
length 2613
RNA type mRNA
GC content 0.51
exon number 19
gene id XLOC_028587
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12074776 ~ 12102036 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTCCACTCAGTTTCTCGTGGTTTAAAATGGCGGCGTTGAGCAGCGCCGAGTCCCCACCGCCCGTCTTCAACGGAGACACCATGAACCGCGATCCGGAGCGGGACCCGGGACTGGACGAGCTGGGCGCGGGGCTCGAACCCGCCTGTCCCGGAGAAGCGGCGATCCCCGAATGTCAACAGGGCATTCCCGAGGAGATATGGAATATTAAACAgatgattaagttaactcaagAGCACCTAGAAGCCCTTTTAGATAAGTTTGGAGGAGAACACAATCCACCGTCTATATATCTAGAGGCCTATGAGGAGTACACTAGTAAGCTGGATGCATTACAGCAGCGGGAGCAGCAGCTTTTGGAAGCTATTGGGAATGGGACCGAGTTCTGCTCCTCGCCGACACCCACCCTGCTGGACGTGAAGGGACAGGGCATTCAGAGTGCCCCCACTGCCCCAAACACCCTAGCTGTCCTGCAGACGCCCACTGACGCAACACGAGGCAATCCCCGCTCGCCCCAGAAACCCATCGTCAGGGTCTTCCTGCCCAACAAACAGAGGACTGTGgttcCAGCTCGTTGTGGGATGACGGTCAGAGACTCCTTAAAGAAGGCTCTGATGATGCGAGGCTTGATCCCAGAATGCTGTGCAGTCTATAGAGTTCAGGATGGGGAGAAGAAGCCCATTGGCTGGGACACAGACATTTCCTGGTTGACGGGGGAGGAGCTTCACGTTGAAGTTTTAGAAAATGTGCCACTGACGACCCATAATTTTGTGCGAAAGACCTTCTTCACGCTGGCCTTCTGTGATTTTTGCCGGAAGCTGTTGTTTCAAGGCTTCCGCTGTCAGACGTGTGGCTATAAGTTTCACCAGCGCTGCAGCACGGAGGTCCCACTCATGTGTGTCAACTACGATCAGCTGGAtTTATTGCTGGCATCAAAATTTCTGGTGCACCACCCCATCACCCAGGAGGAGGTGTCATCAGAGGGCACGACACCCATTTCAGAGATGTGCCCCTCGCTACCACCATCCGAATCTACTGGCTCTCTGTGCCATCCTACTGTGTCCCCGTCCAAATCCATCCCTATCCCGCAATCTTTTAGACCTGGAGAAGAGGACCACCGTAACCAGTTTGGTCAGAGGGATCGCTCCTCATCAGCCCCTAACGTCCATATCAACACCATTGAGCCGGTCAACATTGATGATTTGATTCGTGATCAAGGCTTACCGAGGTCAGATGGAGGCTCAACAACAGGCCTGTCCGCCACTCCCCCTGCCTCCCTGCCAGGTTCCCTGCCCAATGTGAAGGTGTCCAAATCTCCGTGCCAACCGAGGGAGAGGAAGCCATCGTCTTCATCTGAGGACCgcaataaaatgAAAACTCTGGGTCGACGGGACTCGAGCGATGATTGGGAGATTCCAGAAGGGCAGATTACTCTGGGCCAGCGGATAGGATCTGGTTCTTTTGGGACAGTTTACAAGGGGAAATGGCACGgtgacGTGGCGGTAAAGATGTTGAATGTTACAGCTCCCACTCCACAGCAGCTACAAGCCTTTAAGAATGAAGTGGGTGTCCTCAGGAAAACCCGTCATGTGAATATCCTGCTGTTCATGGGCTACACCACCAAACCCCAGCTGGCTATTGTTACTCAGTGGTGCGAAGGCTCGAGTCTCTACCACCACCTGCACATCATCGAGACCAAGTTCGAGATGATCAAGCTGATCGACATTGCCCGACAGACAGCTCAGGGCATGGACTATCTGCACGCAAAGTCCATCATCCATAGAGATCTGAAGAGTAACAACATCTTTTTGCACGAGGATTTAACGGTAAAGATTGGAGATTTCGGTCTGGCTACAGTGAAGTCCCGCTGGAGCGGATCACACCAGTTTGAGCAACTTTCAGGCTCTATCTTGTGGATGgcTCCAGAAGTGATCAGACTGCAGGATAAAAACCCATATAGTTTCCAGTCGGACGTCTACGCATTCGGCATAGTGCTTTATGAGCTTATGTCAGGGGCTTTGCCTTATTCAAACATCAACAACAGAGACCAGATTATCTTCATGGTTGGCCGGGGTTACTTGTCTCCTGACTTGAGCAAGGTGCGCAGCAATTGTCCTAAGGCCATGAAGAGACTTATGGCAGATTGTCTAAAGAAAAAGCGAGAAGAAAGACCTCTTTTCCCTCAGATCTTGGCCTCCATCGAGTTATTGGCACGCTCTCTGCCCAAAATCCACCGCAGCGCCTCTGAACCGTCTCTGAACCGCGCTGGCTTCCAGACGGAGGACTTCAGCCTATACACCTGCGCTTCCCCCAAAACACCCATTCAGGCCGGTGGCTATGGTGAATTCACAGCGTTTAAATAGTGCTGCAAATCCTAAACCTCCATCCCTTGTCAGTTTTTCAGACGTCTTGTGTTCCTATGATGGGTTCATCCATAACAACACAGAAAAAGGACAAGTTTTCAAAGAATGTGCTGTTTTTCTTCCTCTTTACCCGAAGAGCTACGGCCTCAACGgaattgctttaaaataaaaacatctctGCAGGGTGtcactttacaaaaaaataaatgtcataaaCATCGCCGGACAACTCTAATACAGCTTACAAtgga

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04013 MAPK signaling pathway - fly
ko04012 ErbB signaling pathway
ko04015 Rap1 signaling pathway
ko04068 FoxO signaling pathway
ko04024 cAMP signaling pathway
ko04150 mTOR signaling pathway
ko04214 Apoptosis - fly
ko04510 Focal adhesion
ko04810 Regulation of actin cytoskeleton
ko04650 Natural killer cell mediated cytotoxicity
ko04062 Chemokine signaling pathway
ko04910 Insulin signaling pathway
ko04914 Progesterone-mediated oocyte maturation
ko04928 Parathyroid hormone synthesis, secretion and action
ko04270 Vascular smooth muscle contraction
ko04726 Serotonergic synapse
ko04720 Long-term potentiation
ko04730 Long-term depression
ko04722 Neurotrophin signaling pathway
ko04320 Dorso-ventral axis formation
ko05200 Pathways in cancer
ko05205 Proteoglycans in cancer
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05210 Colorectal cancer
ko05212 Pancreatic cancer
ko05225 Hepatocellular carcinoma
ko05226 Gastric cancer
ko05214 Glioma
ko05216 Thyroid cancer
ko05221 Acute myeloid leukemia
ko05220 Chronic myeloid leukemia
ko05218 Melanoma
ko05211 Renal cell carcinoma
ko05219 Bladder cancer
ko05215 Prostate cancer
ko05213 Endometrial cancer
ko05224 Breast cancer
ko05223 Non-small cell lung cancer
ko05161 Hepatitis B
ko05160 Hepatitis C
ko05010 Alzheimer disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05034 Alcoholism
ko04934 Cushing syndrome
ko01521 EGFR tyrosine kinase inhibitor resistance
ko01522 Endocrine resistance
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-040805-1 Predicted to enable protein kinase activity. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in several diseases, including Noonan syndrome 7; carcinoma (multiple); cardiofaciocutaneous syndrome (multiple); central nervous system benign neoplasm (multiple); and melanoma (multiple). Orthologous to human BRAF (B-Raf proto-oncogene, serine/threonine kinase).

Ensembl:

ensembl_id ENSDART00000023894

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058119 lncRNA downstream 13651 12059984 ~ 12061389 (-) False XLOC_028586
TCONS_00057330 lncRNA downstream 14322 12060193 ~ 12060718 (-) True XLOC_028586
TCONS_00057329 lncRNA downstream 16409 12057808 ~ 12058631 (-) True XLOC_028585
TCONS_00057328 lncRNA downstream 18613 12055935 ~ 12056427 (-) True XLOC_028584
TCONS_00055446 lncRNA downstream 39480 12034695 ~ 12035560 (-) False XLOC_028583
TCONS_00055453 lncRNA upstream 20758 12122794 ~ 12224631 (-) False XLOC_028589
TCONS_00055454 lncRNA upstream 68003 12170039 ~ 12224796 (-) False XLOC_028589
TCONS_00055455 lncRNA upstream 115483 12217519 ~ 12224810 (-) False XLOC_028589
TCONS_00058120 lncRNA upstream 119123 12221159 ~ 12224825 (-) True XLOC_028589
TCONS_00058121 lncRNA upstream 127990 12230026 ~ 12238811 (-) True XLOC_028590
TCONS_00055445 mRNA downstream 34695 12033873 ~ 12040345 (-) False XLOC_028583
TCONS_00055447 mRNA downstream 34718 12034833 ~ 12040322 (-) True XLOC_028583
TCONS_00055444 mRNA downstream 67636 11813778 ~ 12007404 (-) True XLOC_028582
TCONS_00055442 mRNA downstream 264241 11804675 ~ 11810799 (-) False XLOC_028581
TCONS_00055443 mRNA downstream 264675 11809137 ~ 11810365 (-) True XLOC_028581
TCONS_00055451 mRNA upstream 231 12102267 ~ 12106039 (-) False XLOC_028588
TCONS_00055452 mRNA upstream 1796 12103832 ~ 12104421 (-) True XLOC_028588
TCONS_00055456 mRNA upstream 141662 12243698 ~ 12286067 (-) False XLOC_028592
TCONS_00055458 mRNA upstream 215425 12317461 ~ 12323228 (-) False XLOC_028594
TCONS_00055460 mRNA upstream 279699 12381735 ~ 12388535 (-) True XLOC_028595
TCONS_00055433 other downstream 466757 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 468185 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055389 other downstream 1413363 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 3487132 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 3933574 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055457 other upstream 173078 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 311383 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 493644 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055473 other upstream 675673 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 804945 12906981 ~ 12914170 (-) True XLOC_028606

Expression Profile

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