RNA id: TU2434130


Basic Information

Item Value
RNA id TU2434130
length 2322
lncRNA type sense_over
GC content 0.43
exon number 3
gene id LOC110508982
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32023057 ~ 32029225 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAACACCCCATGGACACTCCTGTGCTGCCATTGGTTGGCAACGTCAACAGTTGGAAGTGGTGTTGGCTTCTGCAGACTTCCCACTGACGTTCATAAACAGGCCATGGAGGAGACCAGGAAGTTAGACGAGAAGAAGATCCACTTCCTCATCGACGGCTTCCCCCGAAACAAAGAACCTCTATGGGTGGACCACCATCATGGATGGGGAGGCTGACGTCAAATTTGTGCTTGTCTTCGACTGTAGCAATGAGGTCTGTATCGACAGATGTgtagaaagagggaaagagcagCGGGCGCACCGATGACAACAGAGCGAGCCTGGAGAAAAGGTAGCGTCCAAACGCTAAAGCTTTCCATGATCTTTGACCTTTTTtccatgacctttgacctttttaaCATGAACTGGACCTCTCAAAAGGAGACACGGCTcttgctctttaaaaaaaaaagtgtgcttATAAAGCGCCATATGTTGAAATAGCTCTGCCTTTTCCCGGTTTCTAAAATTCTAATTTCAGTTAATGCGACACAACAAGcaatgtatagtgtagagaatcatcaTGCTATCTAAACCTCTGTGAAATATAGTTTCAGTCACCAAAAATATCATATTTTCAGCAGTTTTAAGGtgatgtacaaaaccgaaagaAATATCAAGCAAAAATTAAACGAGGCGAAAGCATAGAAATATTTCATATAGAACAGATCTATTGTGAATCAGACTTGCTTGTaagtgacagatctataactcacatttctatctgcaatcaGTCAGGTTGTACACAACTACATAATGCACCTTTAATAATAGTGAAAAAACATTGACGGGCGTTGCTTTTGAGATTGCGATTTTCAGTTCCACCTTGACTCACCCTTAAAAATAATACACCCTGGAGCATGTTTTAGCTTGGCTGTATGTACTTGGGTCTCCTCTAAGTCCTGGGCGCGTGTCAGCCCTGTTTCTGAGCCTTCGTTTCCTCCCCTGAAGGACCCAGACCTACCTGCAGTCAACACGGCCCGTCATCTCACTGTATGAGAAACAGGGCAAGGTGCGCACTGTGGATGCCTCGTACAGTGTGGACAAAGTAAGCAACAGGAGTATTGTAATGATCGTTTAGagatggattggaccaaggtgcagcgtggtaggcgtacattttacttttatttaaaatgacaccgaaaaaaacaacaaaacggaaagctacatgcagtgcagaaagcaactacacacaaacaagatcccacaactaaaggtggaaaaaaaggctgcctaagtacgatccccaatcagagaccacgataaacagctgcctctgattgggaaccatactaggccaacaaagaaatagaaacatagatttgcccacccaagtcacaccctgacctaaccaaacatagaataaacaaggctctctaaggtcagggcgtgacaagtatACAGCACTGCACCATTGCAGTCACACATGATGTGCATTTGGAACACACTCCGTAGTACACACTCCGTAGTACACACTCAGTAGTATACACTCATTCCCTATGATCTTATAATTCAGTAAGAATTCCCTCAATCTGAGATGTTTCTTTCCCTATTGGTTGTCTCTCTGTTCCCTTGCACCCTCCGGAGGGCAATCACACACTTGTCCCCAGGGGATTGCACATGTACAAAAACACAAACATGAATTTGGTTTTCTCTAATgcatctctttccctccttctctgtTTCAGGTGTTTGCCAATGTCAAAACCATCCTGGACAAGGAGAATTGAAATTCCGCACACTGCCAACAACTACCATTCACAGCTACTTTTAGCTACAGCAACAATATACTTAGTTtatttccattcattccatttttttttggggggggggctattttgtgtgtgtgtgtgtgttagagtgaaTGAGATGCTCTGCTGAAAAACCTTACATGAACCCTCTGAGGGCGTTCACTGTGATAGTAGTACAGCGACTGACAGGTCTGTCATTTTAGTCGGGGGCCTTTGTATAGGGACAAGACTTTTAGAATTTCTCTGCTCTGCGAGCTGCTTGTTTTTGTTGTCAAGCAGAggcatatacagtacagtatgtttacaAAATTACATCTTCTGTGATAAAATCTCTGTACATCATTGTCAGTGGAAACCTAGACAAGCACATGCTTTTTTCACAGACCAACCACTTCTCCGGACTAGATGGAGAAAGATCATGAAGAAAAGGACagaccgagagggaaagagagagcatcTCTGCTAATCAATTTAGATAAACACTGTTGTCTTATGGGTTTCCCCTGTATACTAATAAAACatagaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2434092 lncRNA downstream 8168 32001774 ~ 32014890 (-) True LOC110508978
TU2434071 lncRNA downstream 59708 31958284 ~ 31963350 (-) True LOC110508977
TU2433752 lncRNA downstream 87414 31935028 ~ 31935644 (-) True G2128608
TU2433723 lncRNA downstream 100366 31922092 ~ 31922692 (-) True G2128580
TU2433724 lncRNA downstream 101322 31921258 ~ 31921736 (-) True G2128581
TU2434161 lncRNA upstream 128474 32157032 ~ 32187483 (-) False asip2b
TU2434162 lncRNA upstream 128474 32157032 ~ 32187483 (-) True asip2b
TU2434272 lncRNA upstream 212324 32240882 ~ 32243524 (-) True LOC110508996
TU2434304 lncRNA upstream 239149 32267707 ~ 32268032 (-) True G2129021
TU2434321 lncRNA upstream 268635 32297193 ~ 32297394 (-) True G2129038
XR_002471380.2 mRNA downstream 16968 32001255 ~ 32006090 (-) False LOC110508978
XR_002471379.2 mRNA downstream 55991 31960501 ~ 31967067 (-) False LOC110508977
XM_021589911.2 mRNA downstream 68123 31952199 ~ 31954935 (-) True LOC110508975
XM_036966646.1 mRNA downstream 163958 31822142 ~ 31859100 (-) False LOC110508970
XM_036966563.1 mRNA upstream 6265 32034823 ~ 32051914 (-) False LOC110508983
XM_036966567.1 mRNA upstream 6265 32034823 ~ 32051921 (-) False LOC110508983
XM_036966566.1 mRNA upstream 6265 32034823 ~ 32053854 (-) False LOC110508983
XM_021589916.2 mRNA upstream 6265 32034823 ~ 32061374 (-) False LOC110508983
XM_036966565.1 mRNA upstream 6265 32034823 ~ 32061374 (-) False LOC110508983
TU2433711 other downstream 139918 31882715 ~ 31883140 (-) True G2128568
TU2433533 other downstream 285566 31711608 ~ 31737492 (-) True LOC110508968
TU2433312 other downstream 699694 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 699694 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 702435 31319283 ~ 31320623 (-) False G2128242
TU2434163 other upstream 33491 32062049 ~ 32165022 (-) False asip2b
TU2434159 other upstream 128474 32157032 ~ 32165022 (-) False asip2b
TU2434160 other upstream 128474 32157032 ~ 32165022 (-) False asip2b
TU2434271 other upstream 199848 32228406 ~ 32230214 (-) True LOC110508997
TU2435888 other upstream 1369989 33398547 ~ 33399084 (-) True G2130393

Expression Profile