RNA id: XM_021589916.2


Basic Information

Item Value
RNA id XM_021589916.2
length 4022
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110508983
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32034823 ~ 32063453 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAAGCACTCAGCAGAAACCCGAAGACTGTTGCACGGGAGCCTGAATATAATTATAAAGTCCTTTGCATTGTGTTGATGTGGCGAGTCACAATTAGCTTTTTGAAAGTCCTATATCTTGAAAGCTTTATTTCTgaaatgcaaaacattttgggactgtatcaacagtggactaatagtttttgagtggatttttcctttaagAGCTGTGCCTGCCTGTGAGTGAGCCTATGGCTGGCCCAGTCAGGATGCATAAACGTTGACAACTTTTCAGCAATTTGACCTAGCTCTTGCAATATTACTGAATTTGCTTCTCCCATCTGGCTCTCCAGTCACTGAGCGCTAACACATAGGAAGGAGTGGCATCCTGCCTCTCCAAGGGGACCTGGCTGATTTTACCTCCAGGAGCCACGTTGCCTTCTCAGCCGTCCTGCTATGCCTAAACCAGGCCTTTCACGCCTGGCCACATCCCCTGACTCTATGGAGGCATCCCACCTCGTTTCCATGTCATCGCCCCTTGTCTCCCCATCCCAGTCACGGCTCAAGTACATGTCCCTGGGTGTGCTGGTGCTGCAGACCACCTCACTGGTGCTTACCATGAGGTACTCGCGCACACTGCAAGGCGAGGGGCCCCGCTACCTAGCCTCCTCAGCCGTGGTGTTGGCCGAACTGCTTAAGATCCTCATCTGCCTGCTGCTCATCTTCTATGACCACAaCTTCAGTTTTCTTGTGTTGAATCGGGTGCTGAAGGAAGAGATTCTCAACAAGCCCATGGAGACGTTGAAGCTGGCCATCCCATCCGGCATCTACACACTCCAGAATAACCTTCTCTATGTCGCCCTGTCCAACCTGGACGCTGCTACCTACCAGGTGACGTACCAGCTGAAGATCCTGACCACGGCCCTGTTCTCAGTATCCATGCTGGGGAAGAGACTGGGGCTCTACCAGTGGCTGTCCCTGCTCATCCTCATGACTGGTATCGCTCTCGTTCAGTGGCCTTCGGAGTCTCTGGATGGGCCAGCTCCGACGCCTCTGTCTGCAGGCTCCCAGTTAGTTGGTGTGATAGCCGTACTGATAGCCTGCTTCTCCAGTGGCTTCGCTGGAGTCTACTTTGAGAAGATCCTCAAAGGGACCAAGCAGAGTGTGTGGGTCCGCAACATCCAGCTAGgtTTGTTTGGCCTGGTGTTTGGTCTAATGGGAGTGTTTGTGTAcgacggagagagagtgagggagtccGGAGTGTTCCAAGGCTACAACCCACTCACCTGGACTGTTGTGGCCCTGCAGGCCCTGGGTGGGTTGGTCATAGCAGCAGTCATTAAGTATGCAGACAACATCCTGAAGGGGTTTGCCACCTCACTCTCCATCATCCTGTCAACACTCATATCCTACTTCTGGTTGGTGGACTTCGACCCCACCAgtgtGTTCTTCCTAGGAGCAGTGCTGGTCCTTGCTGCCACCTTCCTGTATGGCTATGAGGCTGAGGCCTGCCACCAGCCACAGCAGAGTCTAGATTGGAGACCCACCACCAGCCATAACAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTCTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTCTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGTCTAGATTGGAGACCCACCACCTGCCATAGCAGAGTCTAAATTGGAGACCCACCACCAGCCATAACAGAGTTTAGATTGGAGACCCACCACCAGCCATAGCAGAGTTTAGATTGGAGACCCACCACCAGCCATAACAGAGTTTAGATTGGAGACCCACCACCAGCCATAACAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTCTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTCTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGTCTAGATTGGAGACCCACCACCTGCCATAGCAGAGTCTAAATTGGAGACCCACCACCAGCCATAACAGAGTTTAGATTGGAGACCCACCACCAGCCATAGCAGAGTTTAGATTGGAGACCCACCACCAGCCATAACAGAGTTTAGATTGGAGACCCACCACCAGCCATAACAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGAGTTTAGATTGGAGACCCACCACCTGCCATAGCAGTCTAGATTGGAGACCCACCACCTGCCATAGCAGAGTCTAAATTGGAGACCCACCACCAGCCATAACAGAGTTTAGATTGGAGACCCACCACCAGCCATAGCAGAGTTTAGATTGGAGACCCTCCACCACAGCCCTTGAACCACAAAGAAGAGACACACAGGGAAATAGGgcaagatggagggaggaataggTTGCTGAGGAGGACGAGCACAACTTCTGAATAAAGAGTGTAGACAGAAGTAGTCCTGCGATGTTTAGAGCTCAAAATAGATCGGAGTTGCCTGAAACGGAATGTCTGAGACCGCCAACACAGactgggttttgtttgtccaatCAAGATGGAGGGCAACATCCGACAATGACTATTTAGCATTTACTAAGCTTTTTATTGAAATTCAAAGTGATTTATGATGCATGGGGGTAAAAATGGTACAATGCTCTCCCCATAGTGACTCCATCAAGTTTGACTCGAACAGGCTCATGAATGTGACTTCTTTACAGTTAACACTCGCATGCAtttcacacatgcacgcacacacgcacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggcccattCATCGAGCTGAAGCTGTTATGATGCCTATGAAGGGTTATGCTCACCTTTGATCTCTCACCTCCTTTCATCTCAGGGGTGATCATGGAATCACCAAAGCATGGAATCATGGGAAAACAGGGACGTTACAGGTATCAACAAAAATGTTTGGATAAATCCAAGAATTCACTGACAATGTTAGTTTGAGATAAATATTCAATTTGTATATATTTGATCATGTTTTTATGTATTTGGGGAATAAGGGAGTAGGGGAAAGGCAGTTTGTAGTATGAATGTATTTTATGGGTACTGATGGTCAATAATACCAAGGGCATTCAAATGAATTGAATACCTCACACGTTACAAAGCCCCTCCTCATTTGTCTTTGAGTGACAGCTCCACCTAGTGGGAGTGTTGGGCCATAGCACATTTACTGCAGAGGGGAGGGGTTGAGACGAATGACTAGAGATGCTGGATGTCTTTTTATTGGGGACAAGGAGGAAAAGGATTAAAGGAAGGAATGCTTTGAACTTTCTGCTCATTTTCGGACATCCAGTTGCTGATGTTTGTATGCAAAAATTGCCTTTCATGCAACAACATTAATTAATAATTAAAGTGATCAAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2434132 lncRNA downstream 5598 32023058 ~ 32029225 (-) False LOC110508982
TU2434140 lncRNA downstream 5598 32023058 ~ 32029225 (-) True LOC110508982
TU2434137 lncRNA downstream 6185 32023058 ~ 32028638 (-) False LOC110508982
TU2434130 lncRNA downstream 6265 32023058 ~ 32028558 (-) False LOC110508982
TU2434161 lncRNA upstream 95658 32157032 ~ 32187483 (-) False asip2b
TU2434162 lncRNA upstream 95658 32157032 ~ 32187483 (-) True asip2b
TU2434272 lncRNA upstream 179508 32240882 ~ 32243524 (-) True LOC110508996
TU2434304 lncRNA upstream 206333 32267707 ~ 32268032 (-) True G2129021
TU2434321 lncRNA upstream 235819 32297193 ~ 32297394 (-) True G2129038
LOC110508982 mRNA downstream 6388 32023057 ~ 32028435 (-) False LOC110508982
XR_002471380.2 mRNA downstream 28733 32001255 ~ 32006090 (-) False LOC110508978
XR_002471379.2 mRNA downstream 67756 31960501 ~ 31967067 (-) False LOC110508977
XM_021589911.2 mRNA downstream 79888 31952199 ~ 31954935 (-) True LOC110508975
XM_036966647.1 mRNA downstream 175723 31822142 ~ 31859100 (-) True LOC110508970
XM_021589918.2 mRNA upstream 13597 32074971 ~ 32087594 (-) True LOC110508985
XM_021589921.2 mRNA upstream 38929 32100303 ~ 32104711 (-) True tsen15
XM_021589923.2 mRNA upstream 58599 32119973 ~ 32129371 (-) True LOC110508991
XR_005040246.1 mRNA upstream 95658 32157032 ~ 32165037 (-) False asip2b
XM_036966717.1 mRNA upstream 95658 32157032 ~ 32165046 (-) False asip2b
TU2434105 other downstream 6265 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other downstream 6265 32023058 ~ 32028558 (-) False LOC110508982
TU2433711 other downstream 151683 31882715 ~ 31883140 (-) True G2128568
TU2433533 other downstream 297331 31711608 ~ 31737492 (-) True LOC110508968
TU2433313 other downstream 711459 31319341 ~ 31323364 (-) True G2128242
TU2434163 other upstream 675 32062049 ~ 32165022 (-) False asip2b
TU2434159 other upstream 95658 32157032 ~ 32165022 (-) False asip2b
TU2434160 other upstream 95658 32157032 ~ 32165022 (-) False asip2b
TU2434271 other upstream 167032 32228406 ~ 32230214 (-) True LOC110508997
TU2435888 other upstream 1337173 33398547 ~ 33399084 (-) True G2130393

Expression Profile