RNA id: XM_021589921.2


Basic Information

Item Value
RNA id XM_021589921.2
length 1435
RNA type mRNA
GC content 0.46
exon number 4
gene id tsen15
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32100303 ~ 32104711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACCGTTTACATTGCAGTACTTTAGCGTCCTAAATGGGAGTGAGGCACTTTCACAGAGTTCACACGTTGTCAGCATCACAGTGTATGTGTGGGATTTAAAGTGATTTACAAAATATAGACGAGGAAATATGTCGGAGTTGACGAAGAAAACAGACGAGGATGTAATTGAGAAACCACTTCCCCCTAACTGGATTTTACAGCATCCAATGTACCAACATCTGATGAACCTAGATGTTGGAGACAGTGCTCAAGTCCATGCAGCTTTCTTGGTGTACCTGGATCTAGCTGAAGTGCGTCAGTGGAAGGAGGTGAGTGGAGTGGGGTGCTCTGAGCTGCGACTGGTGTTGCtggagggaagggagaaggaaggagagcccaCTCAGATGGTGCTCCCACTACCTGTACACAGAGGCCTGAGCCACAGAAGtgtgcGGTCAGTGCTGGCCAGAGGCTCGCCCATGCTCCTGTGTGTGGTGGCATCTGACTCCAGCCTTGTCTACCAGAGGATGTGTGATGGCctgctgacccctgacccccccGTGGGCATCCAGGACCAGGGCCGCCGGCAACACCGCAAAAGACGCCAGCAACATTGACCCGCAGCAGAACCACAGTGACCGTTGGCAGACCGCTATGGTCTGGTAATGAACTCTGCAGTGACCAGGAGAGAACCACAGACTGAATGGCAGGCGGTTGTGGTCTCGTAATGATGAACCAAAGTGCCAGTGTTTTCCTTAAATTTGGCAGGGCGTGCCTAGCTTCATTGCTCCGTTTCTGAACTGTTTTTGAGACCCTGGGCATAGCGACTTTCTTAAGGCTCAACAGCTAGCCTACATAAAGTATGACAGACCCTGAGAGACTGCGTCAAGAGAAATTTGACAAATATTACAACGGCCATAACTGCCTTTAAAAGGTGCCACAGTCTCTGTGGGCCAGAGGGTTCGTGTTATAGCTTCTCGGACAATTGACAGACAATCAATCAGACACTGGATTGCAGTTGGACATAAAATTGCCAGAGGATACATAAGTTGTATTGAATTAAATCTCCATACAGTACATCCATGAAGCAATACATGCTTATGTAGCAGACTGCCATATCCACAGACACCACTTGAACTGGTTATAGTTACTGTAACACTGTTTTGTTTTGTGCCGACTCCATAcccatttactttcagtgcagttgTGAGTTTTAAACTGTAGAGGGCATGAAAACTACCATGGATGCCTCAATGATATTGCTAGACCATCATTTGACATTGACAGATAGACAACAGTAAACACAATGATGGGTGTGCCTGTGCATTACGAGGTATTAGTAACACCACAAGGACCATATGAGAAACCATTTTGTTTGACAAATGATATTACAGTGACCTGAAAACACGTTATTTTACTAGAAAAACTCTTAATTGAACATTAAAAAACGAACAA

Function

GO:

id name namespace
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0000213 tRNA-intron endonuclease activity molecular_function

KEGG:

id description
K15324 TSEN15; tRNA-splicing endonuclease subunit Sen15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2434132 lncRNA downstream 71078 32023058 ~ 32029225 (-) False LOC110508982
TU2434140 lncRNA downstream 71078 32023058 ~ 32029225 (-) True LOC110508982
TU2434137 lncRNA downstream 71665 32023058 ~ 32028638 (-) False LOC110508982
TU2434130 lncRNA downstream 71745 32023058 ~ 32028558 (-) False LOC110508982
TU2434161 lncRNA upstream 52321 32157032 ~ 32187483 (-) False asip2b
TU2434162 lncRNA upstream 52321 32157032 ~ 32187483 (-) True asip2b
TU2434272 lncRNA upstream 136171 32240882 ~ 32243524 (-) True LOC110508996
TU2434304 lncRNA upstream 162996 32267707 ~ 32268032 (-) True G2129021
TU2434321 lncRNA upstream 192482 32297193 ~ 32297394 (-) True G2129038
XM_021589918.2 mRNA downstream 12709 32074971 ~ 32087594 (-) True LOC110508985
XM_036966564.1 mRNA downstream 36850 32034823 ~ 32063453 (-) True LOC110508983
XM_021589916.2 mRNA downstream 38929 32034823 ~ 32061374 (-) False LOC110508983
XM_036966565.1 mRNA downstream 38929 32034823 ~ 32061374 (-) False LOC110508983
XM_036966566.1 mRNA downstream 46449 32034823 ~ 32053854 (-) False LOC110508983
XM_021589923.2 mRNA upstream 15262 32119973 ~ 32129371 (-) True LOC110508991
XR_005040246.1 mRNA upstream 52321 32157032 ~ 32165037 (-) False asip2b
XM_036966717.1 mRNA upstream 52321 32157032 ~ 32165046 (-) False asip2b
XM_021589925.2 mRNA upstream 52321 32157032 ~ 32187519 (-) False asip2b
XM_036966208.1 mRNA upstream 87091 32191802 ~ 32199230 (-) False LOC110508994
TU2434105 other downstream 71745 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other downstream 71745 32023058 ~ 32028558 (-) False LOC110508982
TU2433711 other downstream 217163 31882715 ~ 31883140 (-) True G2128568
TU2433533 other downstream 362811 31711608 ~ 31737492 (-) True LOC110508968
TU2433313 other downstream 776939 31319341 ~ 31323364 (-) True G2128242
TU2434159 other upstream 52321 32157032 ~ 32165022 (-) False asip2b
TU2434160 other upstream 52321 32157032 ~ 32165022 (-) False asip2b
TU2434271 other upstream 123695 32228406 ~ 32230214 (-) True LOC110508997
TU2435888 other upstream 1293836 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1935495 34040206 ~ 34066665 (-) True G2130771

Expression Profile