RNA id: TCONS_00055454


Basic Information

Item Value
RNA id TCONS_00055454
length 534
lncRNA type antisense
GC content 0.45
exon number 3
gene id XLOC_028589
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12122794 ~ 12224825 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGCATGGGAAAAGACTCGTCTGGcagtctaaaataaataataaaatgcctAAAATGTATTAGCTGTATAAGTTACAGGAGTTTATAAGACTAATAATACCAAATACATTAAGTTTTTCAATCTTACCCAAAACAAATACTCATATAGTTCTAATAACACCTCAGGAAAATTCAATGGCAGCCAGGCAATACAAGAAGACTTCGAGTTTAGATTGAACTCACCGCCCATAAGGAAGAGCAGTCCTGCCACATACTGCATGAGGCCGCGGTCCCAGCAGCATCCCAGCATCCCGATGATCCAGCCGAAGAGAATGATGGCCACCGCCATTCCCATAAACCCTGCCGTCATCCTCCGCAGATCTGAAATCAACACATGTAAACCATTCAGAGATGATGAGGACACAAGAAACATCCACTACTCTCTGCTCTCATACGTCTCCATGCTGGATCGAGGAGAGCCAGAGAAAGATGGAGACTGTTCGGATACCGCAGGGTTTGGGGTTACAGGAGAGTGTCTTCCGTCACCTGACAGA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:2000055 positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDART00000150550

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055450 lncRNA downstream 68014 12078332 ~ 12102025 (-) True XLOC_028587
TCONS_00058119 lncRNA downstream 108650 12059984 ~ 12061389 (-) False XLOC_028586
TCONS_00057330 lncRNA downstream 109321 12060193 ~ 12060718 (-) True XLOC_028586
TCONS_00057329 lncRNA downstream 111408 12057808 ~ 12058631 (-) True XLOC_028585
TCONS_00057328 lncRNA downstream 113612 12055935 ~ 12056427 (-) True XLOC_028584
TCONS_00058121 lncRNA upstream 5230 12230026 ~ 12238811 (-) True XLOC_028590
TCONS_00057331 lncRNA upstream 15338 12240134 ~ 12241573 (-) True XLOC_028591
TCONS_00058122 lncRNA upstream 63969 12288765 ~ 12290321 (-) False XLOC_028593
TCONS_00058123 lncRNA upstream 63969 12288765 ~ 12290543 (-) False XLOC_028593
TCONS_00058124 lncRNA upstream 63969 12288765 ~ 12297450 (-) True XLOC_028593
TCONS_00055451 mRNA downstream 64000 12102267 ~ 12106039 (-) False XLOC_028588
TCONS_00055452 mRNA downstream 65618 12103832 ~ 12104421 (-) True XLOC_028588
TCONS_00055449 mRNA downstream 68003 12075040 ~ 12102036 (-) False XLOC_028587
TCONS_00055448 mRNA downstream 68014 12074776 ~ 12102025 (-) False XLOC_028587
TCONS_00055445 mRNA downstream 129694 12033873 ~ 12040345 (-) False XLOC_028583
TCONS_00055456 mRNA upstream 18902 12243698 ~ 12286067 (-) False XLOC_028592
TCONS_00055458 mRNA upstream 92665 12317461 ~ 12323228 (-) False XLOC_028594
TCONS_00055460 mRNA upstream 156939 12381735 ~ 12388535 (-) True XLOC_028595
TCONS_00055461 mRNA upstream 176350 12401146 ~ 12477278 (-) False XLOC_028596
TCONS_00055462 mRNA upstream 187899 12412695 ~ 12477278 (-) False XLOC_028596
TCONS_00055433 other downstream 561756 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 563184 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055389 other downstream 1508362 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 3582131 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 4028573 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055457 other upstream 50318 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 188623 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 370884 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055473 other upstream 552913 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 682185 12906981 ~ 12914170 (-) True XLOC_028606

Expression Profile

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