RNA id: XM_021589923.2


Basic Information

Item Value
RNA id XM_021589923.2
length 4237
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110508991
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32119973 ~ 32129371 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACCCTCAACTCAAGCACAGAGCACCACCTTTCCACGCTGCTGTATCGGTCGCTTCCACCCACTGAGATACACATCCACCACGCCTGCTCTTCACGTCAGTCCGCAACGTCAGATTGTGCGTGTTGCTCTGTATCGGTGGACGTAGGTTTGACCGGCTTCTCAGAGGCAGACACAATGAGCCCTCGGATGATGTAAAGCATGCATGTGGGGCTGGAGGCACGGGCACGTTTTGGCAGTATAGTtttttgcttttgttttataTAATTTCGAGCACACATATCGACAAGACTTTGTGACGTATAGGGAGGGATAGCTGGAAAAGTCGGTTCAACGAGTTCGTCTGACATAACGAAGTCGAAATCTCTGGCTAGTCCCCTTCGAAGACGACACcgaaaacaaaacaacattttaCAAAGGACTTGCTAAAGTCAACGACATAAAACAAGAATGTCGATGGTTGCGTATTCAGATTACTTAGCCGCCAAATGTCTGATGTCGATCTCTAGCGGTCCCGTCCTACACCGACCCACCCCGGTTGTCCCCGCCGCCCAGCCCCCTCCCCAGGCCGTTCATCCTGGGGAGCCCGAAGGGTCGAGCGAGGACAGGGAGGTGCGCGAGACGCTGAGACTCGAAGGGGCCAACATGATGACGGTGGCCGGGATCCTCACGGACCTCCACGGCAAGTTCCGGTCCATGTCGGCCTACTCGGAGAGCAGCAACTCCTCATGTGGGGAGAGCGGCTACACCACGTTGTCTGACTCAACTACCCCAACCATGACCCCCTCTGCTACTCCAATTCCTGGACAGTACAATGCTACTCAACAGCAGTGGGGAGGAGGGACGCCTCGGTCCCCAGTAAAGCGACATCAGTGCATTTACGACGGCTGTGACCGAGTTTATGGAAAATCATCTCATCTGAAAGCCCATATCAGAACCCATACAGGTGAACGACCCTTTCCCTGTACCTGGCCCGACTGCCAGAAAAAATTTGCCCGTTCGGACGAGCTGGCTcgccacacgcgcacacacacaggcgagAAGCGCTTCCTGTGCCCGCTGTGCGACAAGCGCTTCATGCGCAGCGACCACTTGATCAAGCACGCCCGCCGCCACCCCGACTTCCAGCCGTCCATGCTGGGCCGCAAGGCCTCGTCCCCTGGGGGACAGGGGGCGTCCAGCCCAGCCATGGGCCAGTAGAGTGCAGGGGTCAGTGGGTTCACTCCCACGTCTAGGGCTGGGGTCAGCAAGGGTAACAGGGAGTGGTCCTAACCAAAGGTCCTAACCAATCAGATCCATTAGCCAGGCCTGTCTGTCACAACTCCCCCCACACAACAGTATCTAGGTGGGGGCACGTTCACCACCCACCCCGACGGATGAAGATGACACCAGTCTCAACGCTCAACTAATACTCAAAACCTTTAACTGAAAAACACTCACACATGCAGGGAATTCTCAATGTCTTCACTCCTCAGTCTCAGCACATGCATCAGCCAAATGTTGTCCTTCCTTTCTCGGCTTATTTTAGAGAAATGGTGCTCCATGCTTTTTTACTGTGGCTGTTTCCTTTCTTGCTAGCGCCATTTTGTGATATTTAACTAGAGGCGTAGAGAGGCTGAGGTCAACTAAAAGTGTAGCAGCTTTGCTGATGACATGTCCTCAGTTTCAAGAGGTTGCACATTCCATGCATTTTTGTCGTTGGAAATTAGTTGGCTtagttataaaaataaaaaaatgtttttgtaataTCGTATTTACTGTATTATAATTTTAAATGCTGGTCAACTTAACTTTCAGTAATGATGATGAATGGTTTAAACCGCTGAAGACTAGCTGGTTACACACCATTCTTATTCATTCTAGATCAACTTTTCAATTTTCTTTTTACTATCCATGAAACCTTGACGAATGATACACGTAATACTAGGTCCGTTACGGATGCAAATGTATATAACCTTTAACCTTCTATTGTAGAGAATATCGTGAACAAATATTAGAGGAAGTAATACTTGTGATGAATTGTAGTCCTTATATTAGGGGTGACAGACTACACACTTGGATAGGATAGCGCTGCCTGTGAGTAAGCGTGTGTCTCTAATTACATTTTGTTAGAGAAAGAGAAGACACTTTCTACAGTTTCCACTTGTCTGTCCATCTTTATGGACATGATTACTTTATCTCAGTGAACAACACTTCAGGAAATTCAGAAAGCCTTAAACTATTTCATACTTATTATTGCACCATGTTTACAGTTTGAATCATTGCTACAGGTTTACGCCGACTCGTCGGCACATTACAAATACACATATGCAATATACCACTTTTAACCAGAGGTTGCTTTTAATGCTAGCTACTTGGCTAATTTGTGTGACAGGTTTTCACTGTGTTAATATGCTTCTACAATTGAACACTGTGGAATTTGATAAAGATACACGTGATCTCATTATACTTATTATAACCAATGGTTAGGTTAGTCAGACACATTTGTCCAAGTGCTTTAGGAAAGTGCGATAAAGGATAGATTGGGGCTAttatgtgttgttttttttaaactgtttcTTTGCTGAGCATAATGACTTGGTTCTATGTATGTGGCTTTTCTCAGACACTATGCTCTCAGAGTCTTGCTATAACTGTAATTTCTTCCACAGAAAGATTGAATTGCGTGACTAAGGCACCTCTCTCGTCATACAGTCCCTCCAATATTTTCCTTCTCTGTCTTTACTAACCAACTGACTTTAATGGATCATTCTTGCTGCATCATTTGGTCACTGTTAGTTCCATTGTAATGGGATGTACCTGTAACTTTTATGTTGAAACGCTTTTGCCGTTTGTACACATTTTCACAAGTTCTTATCTGTTTACAGCTCTCGGTAACTGCTGGCAGTTATCGAACAAAAATGGACTACTTCAAACCAAGCCACAATATGACGTAGTGAAAGTGTTTGCTATGTTTTCAAATGAATTGAAAATGTCTTCATGGATGTCATCATTTtccaaatgtatttgtttaattTTCTGACAGCAAGTCTGCCTCGCGCCAAATTTATGATTATTTCACACAAAGGGTAACAATTTACCTCGCAATGTTTGTGTAATACTTGTCTTCCCTTGGAAAGCAGTTGGACAAAAAGGGACTCCATTAAGAAACTCACCTTTTCTCATGAAACGCTTCTAAACACAATCAAGCCTTAGGTTTGAACTTCCTGTGTTCTTCAAGTGAAAACTACACTCTGCCAGGGAAACAAACATCTCTTTAGTTGTCTTGTCTATATTCTTGATGTATGCTCCGTGTACAGAGTTTTGACTGTGCTTAACACTTTTTCCATAGTATATTACGTACCTGTGGTGTTTCAATAGTGCTGATCATCAATTTTTGCATCTCACAAGTGTTCAGTATGTACCACTACCCTTCATGTGGCACAATGCTACTTAGATCAGTTTAGTCTGGACCTACTGCGGTACATTTTGTAACACTTCATTTCGGTGGTACCTACATAAGGACTTAATAACCCATTCATAAGTAGTACATGAACATTGCATAAATGCTTATGTTAACAagttgatatttcagttttgtcacTATTTGCAGTTAACAAACGTTTATGCAATATTCATTAACTGCTTAAATGTGTACTGTATGGGTTATAAAGTGCTTATGTAGGTTCCCTTCAGATAAAGTCACCAATAACTCAATTTACACTAAATCTGGCTGGGGGGGGAGAGGGCATAACCATATCTCAAACAATGTAATTAATCGGCGCTGAACACCTTATAGGGCATACTATGCTAATTGTTTCCCACTGTACACTAATTAAACAAATCTACACAGCTGCATTGTTTGTATAAGAACCAATATTTTTAGAATTTTGTTAAGCCAAATTTTTACATCAATAACTCTTTTAAGAAACCTCTTATTTGAGCTTTGGTTACGTAGATAAGAGGACCTGTGGAACTAATTGAAAAAATGCTGCAACTTGGTTCTTTGATATTTATACTCTCAGGTGTCTTTTAAACATTTCTTCCATATTTCCTGTGCAACACCCAAGTGTAATCATGTATTGTTGCTATTATTTTAAGGATTAATTTATTAGGATTTATAATTTGCGTGGTTtaattcatttttcccatagctTATTGTTTTGTGATATGGAACATATACTAATAATTCGGTTCCATTGTTTGCTTGACACAGACTGCCAGTACTTTTTCATAATAAATAAAAACCTTAAGTtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2434132 lncRNA downstream 90748 32023058 ~ 32029225 (-) False LOC110508982
TU2434140 lncRNA downstream 90748 32023058 ~ 32029225 (-) True LOC110508982
TU2434137 lncRNA downstream 91335 32023058 ~ 32028638 (-) False LOC110508982
TU2434130 lncRNA downstream 91415 32023058 ~ 32028558 (-) False LOC110508982
TU2434161 lncRNA upstream 27661 32157032 ~ 32187483 (-) False asip2b
TU2434162 lncRNA upstream 27661 32157032 ~ 32187483 (-) True asip2b
TU2434272 lncRNA upstream 111511 32240882 ~ 32243524 (-) True LOC110508996
TU2434304 lncRNA upstream 138336 32267707 ~ 32268032 (-) True G2129021
TU2434321 lncRNA upstream 167822 32297193 ~ 32297394 (-) True G2129038
XM_021589921.2 mRNA downstream 15262 32100303 ~ 32104711 (-) True tsen15
XM_021589918.2 mRNA downstream 32379 32074971 ~ 32087594 (-) True LOC110508985
XM_036966564.1 mRNA downstream 56520 32034823 ~ 32063453 (-) True LOC110508983
XM_021589916.2 mRNA downstream 58599 32034823 ~ 32061374 (-) False LOC110508983
XM_036966565.1 mRNA downstream 58599 32034823 ~ 32061374 (-) False LOC110508983
XR_005040246.1 mRNA upstream 27661 32157032 ~ 32165037 (-) False asip2b
XM_036966717.1 mRNA upstream 27661 32157032 ~ 32165046 (-) False asip2b
XM_021589925.2 mRNA upstream 27661 32157032 ~ 32187519 (-) False asip2b
XM_036966208.1 mRNA upstream 62431 32191802 ~ 32199230 (-) False LOC110508994
XM_021589926.2 mRNA upstream 62431 32191802 ~ 32199385 (-) False LOC110508994
TU2434105 other downstream 91415 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other downstream 91415 32023058 ~ 32028558 (-) False LOC110508982
TU2433711 other downstream 236833 31882715 ~ 31883140 (-) True G2128568
TU2433533 other downstream 382481 31711608 ~ 31737492 (-) True LOC110508968
TU2433313 other downstream 796609 31319341 ~ 31323364 (-) True G2128242
TU2434159 other upstream 27661 32157032 ~ 32165022 (-) False asip2b
TU2434160 other upstream 27661 32157032 ~ 32165022 (-) False asip2b
TU2434271 other upstream 99035 32228406 ~ 32230214 (-) True LOC110508997
TU2435888 other upstream 1269176 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1910835 34040206 ~ 34066665 (-) True G2130771

Expression Profile