RNA id: XR_005040246.1



Basic Information


Item Value
RNA id XR_005040246.1
length 1125
RNA type mRNA
GC content 0.44
exon number 4
gene id asip2b
representative False

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32062049 ~ 32187519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGCCCATTCACTAGAACGAGAACCTTCTGAGCTGCGATATTGATAGACTACCATATTaagacatttaaaataaaaaaatatattcattTCTCCAGAGTGGATAAAAAGTAACCTGTTACAAGATTGGAAGTGGAGATGTTGGGAAAACATTTTCTCTGGGGTTGTCTCCTTTCGGTGTCAATTCCGTTATGTTTCGCCGAAGACCTGAAGAGGGATGCGCATATACAGCATGAAAATGATTCAGTTTGGAGCCAAGGGAAACCCGGAAGACTGTTTGCCAGGAGACGGATTTTGCCACATCAGGGACAGCACCACGTTGAATTTCAGAAACACGAGCCTGTAGCCCCTGCCCGGCGGTGTGGCCGTCTGATGGATAGCTGTGCCCCTCACACCCCCTGCTGTGACCCCTGTGCTTCCTGCCGCTGTCGCCTCTTCAACACCATCTGCCACTGCTGGAGACTGGGCCCACACTGCCCCAAGAAGacctagacaaacacacacacacacacacaccatacataacTCTtcaccacatatacacacacgacTGCCACTGTTGGAAACTGGGCCAGCACTGCCCCTAGAGGAACCAGAGACCCtgtacaggcaaacacacacactcacatacacatctCACAGAGACTGCTAGACATCACACTGATGCACTTGCACAGGTAAACACATACGGATACAAAAACATGGACATACTACACAGATATATATGCTTAAATGTTTTGGACCTGATGAATGACACATCACATATCACAAGGTCCACAATATAGGTTCAATGACACATCACGTATCGCAAGGCCCACAATATAGGCTCAATGACACATCACGTATCGCAAGGCCCACAATATAGGTTCAATGACAGATCACGTATCGCAAGGCCCACAATATTTTCTATGTATGTATATAAACGATGTATGGATGTGTTGTGGATATGTAACAGTATATGTTTCCTGCACAACTGTATTAATTCTGCTTTTGTATAACTGTGCACCTCTGCTACTGTAGATTGTAGGTCATGTCGAGCCAATGCTAACCCATAAAAAACATCAAATAACTTCCACAAACATCCTCTCTATATTTTCTCTATTGAATAAATAACTTTGTTAGCCTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2434132 lncRNA downstream 127807 32023058 ~ 32029225 (-) False LOC110508982
TU2434140 lncRNA downstream 127807 32023058 ~ 32029225 (-) True LOC110508982
TU2434137 lncRNA downstream 128394 32023058 ~ 32028638 (-) False LOC110508982
TU2434130 lncRNA downstream 128474 32023058 ~ 32028558 (-) False LOC110508982
TU2434272 lncRNA upstream 75845 32240882 ~ 32243524 (-) True LOC110508996
TU2434304 lncRNA upstream 102670 32267707 ~ 32268032 (-) True G2129021
TU2434321 lncRNA upstream 132156 32297193 ~ 32297394 (-) True G2129038
TU2434324 lncRNA upstream 140262 32305299 ~ 32305562 (-) True G2129041
TU2434327 lncRNA upstream 144373 32309410 ~ 32309627 (-) True G2129044
XM_021589923.2 mRNA downstream 27661 32119973 ~ 32129371 (-) True LOC110508991
XM_021589921.2 mRNA downstream 52321 32100303 ~ 32104711 (-) True tsen15
XM_021589918.2 mRNA downstream 69438 32074971 ~ 32087594 (-) True LOC110508985
XM_036966564.1 mRNA downstream 93579 32034823 ~ 32063453 (-) True LOC110508983
XM_021589916.2 mRNA downstream 95658 32034823 ~ 32061374 (-) False LOC110508983
XM_036966208.1 mRNA upstream 26765 32191802 ~ 32199230 (-) False LOC110508994
XM_021589926.2 mRNA upstream 26765 32191802 ~ 32199385 (-) False LOC110508994
XM_021589927.2 mRNA upstream 26765 32191802 ~ 32199386 (-) False LOC110508994
XM_036966209.1 mRNA upstream 26765 32191802 ~ 32201824 (-) True LOC110508994
XR_002471384.2 mRNA upstream 63388 32228425 ~ 32230258 (-) False LOC110508997
TU2434105 other downstream 128474 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other downstream 128474 32023058 ~ 32028558 (-) False LOC110508982
TU2433711 other downstream 273892 31882715 ~ 31883140 (-) True G2128568
TU2433533 other downstream 419540 31711608 ~ 31737492 (-) True LOC110508968
TU2433313 other downstream 833668 31319341 ~ 31323364 (-) True G2128242
TU2434271 other upstream 63369 32228406 ~ 32230214 (-) True LOC110508997
TU2435888 other upstream 1233510 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1875169 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1876401 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1876532 34041569 ~ 34042565 (-) False LOC110509052

Expression Profile