RNA id: XM_036966208.1


Basic Information

Item Value
RNA id XM_036966208.1
length 1981
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110508994
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32191802 ~ 32201824 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTTTGCATAAACTAGctaaatggagagaaaaaaataaaagttAGCCAAAGTGTAATGATTTTGATCTAATAATTATTTTGTGACCACTCAAAGTAGGCTACAATAAAAGCATCGAGTGATAAATAAACCTATTTGAGTCGGATATTCACACTGAACTTTCTAATATGCTCGGCAGGAATTATCATGTTTACGTTAGCGTATCCGTCTGCCCATGCCCGGAAGGGGTCATTTTTCCGTCTTGTTTCGCTAGGATAATGCGGGAAGTGAGTGATTGACAATGCAGATGTTCTGTCCATGAACTTCATCTGGTATGCATACGTCGGTGATTCCAGAGAATCTGACCGGAATTTCTTAGTTTCTTTATCATCTACAGCTGTCAGGCATGCGGACTATCTTCTCCGATCTGTCCAGTATCCACATCTCCTTCTCCAAATCAGAGCAATTCGTTTCTAAAAGCCAGGGATAGGCTACAGTATAAGGTAAAGAGGTAAGATGGCCACCCCCTTTGTCCCAGTGCCTGTCCCCATGGAACGAACCCCGACCTGGCCAAAGAGGACCCCCCCCCTGGGTATTATCTCTAGCTCTGGCTTTTCACCTCCTGGAAAGTCCCCCTGGGTGAAGGCCACTGGGTCCTGGGGGGCCACGGTAGCCTGTCCGAGCCTCCCCCAGGCGTGTTCCAGCCCCGAGGGGTACAGGATATCcagaggaggggagcaggggtCGGTCCAGGAGGATGGTACTCCAGGGGACAGTTGGGAGAGGCCCCTCACCCCTTCCCTGCTGGGCTATGAGGTCATGGAGGAGAGGGCAAAGTTCACGGTGTATAAAATCTTGGTGAGAAGGAATGAGGAAGAGAACTGGGTGATCTTCAGAAGGTACACAGACTTCGCCAGACTCAACGATAAGCTTAAGGAGTTATTTCCCAGGTTCAGACTAGCCCTTCCACCCAAGCGCTGGTTCAAGGATAACTACGACATGGAGTTTCTGGAGGAGAGACAGTTAGGCCTACAAGCCTTCCTACAGAACCTCATAGCACACAGAGATCTCACCAACAGTGAAGCGGTCAGACAGTTCCTTTGTCTGGATGATCCGCCAGGCCCCTTTGACAGCCTGGAGGAGAGCAGGGCTTTCTGTGAGAcgctggaggagaccaaccaccGTCTACAGAGGGACCTGTCGGAGAAACAGCGAGAGATTGACTCTTTGAAAACAGCCCTGGATGAGAGACAGACCCACATTGGGCTCCTGGAGAAGAGAGTGAAtggtaAGTCCCCCAGCCCAGAGGGCCTTACTCCAGAGAGCAGCAGACTATCAGCCCTAGGCAGTGAGAACAGCTCTGACACAGACACTgccgcagacagacacagagacacagacggagaggcggacatagacacagacagggGATCATCCACTGCATTGGAGGCTGACCAGGAGACATGTCCTGAAAGAAGAAGCTCAGAAATCCAAGGGCCACTCAAGGGTCATGGGGCGTACTGGTCATCTGCGGCCATTGATTGTTCACCAGACGCTTTTATAAATTCAACAACTCCATAGAATGATGTGGAATTCTGCATTTGATTCTGACCTGGGACCTGGAAAAGTATATTATTCCAAGATGGACTGATGATGAGCTACGAGTGTATAGACTTCATGTACAGATTCTTGCTTGTAGTGACTGCGTTAATGGGTGATTGAAGTTTTcatataaggtgtgtgtgtgtgggtgggggggggggggggggggttgtgtgtctAAGGATTCTAGAAATATACTGTAGATGAGTATTGATTTCCAACACTTGTTCTGCTCTCATCTAATGCCTTGGTTGTAAAATAATCAAGTGAAGATATACTGCAATATGTGTCTAACTGCCTTACATCAATCTCTTTTCTACAAAGCtaagtactgtagtactgtactcAGGTTCTCCTCCCTGCGAAAAGCAATACTAATAAACTTGATTGATCTTAAAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2434161 lncRNA downstream 4319 32157032 ~ 32187483 (-) False asip2b
TU2434162 lncRNA downstream 4319 32157032 ~ 32187483 (-) True asip2b
TU2434132 lncRNA downstream 162577 32023058 ~ 32029225 (-) False LOC110508982
TU2434140 lncRNA downstream 162577 32023058 ~ 32029225 (-) True LOC110508982
TU2434137 lncRNA downstream 163164 32023058 ~ 32028638 (-) False LOC110508982
TU2434272 lncRNA upstream 41652 32240882 ~ 32243524 (-) True LOC110508996
TU2434304 lncRNA upstream 68477 32267707 ~ 32268032 (-) True G2129021
TU2434321 lncRNA upstream 97963 32297193 ~ 32297394 (-) True G2129038
TU2434324 lncRNA upstream 106069 32305299 ~ 32305562 (-) True G2129041
TU2434327 lncRNA upstream 110180 32309410 ~ 32309627 (-) True G2129044
XM_021589925.2 mRNA downstream 4283 32157032 ~ 32187519 (-) False asip2b
XM_036966717.1 mRNA downstream 26756 32157032 ~ 32165046 (-) False asip2b
XR_005040246.1 mRNA downstream 26765 32157032 ~ 32165037 (-) False asip2b
XM_021589923.2 mRNA downstream 62431 32119973 ~ 32129371 (-) True LOC110508991
XM_021589921.2 mRNA downstream 87091 32100303 ~ 32104711 (-) True tsen15
XR_002471384.2 mRNA upstream 29195 32228425 ~ 32230258 (-) False LOC110508997
XR_002471383.2 mRNA upstream 42562 32241792 ~ 32243585 (-) False LOC110508996
XM_036966476.1 mRNA upstream 44886 32244116 ~ 32263430 (-) False ccdc39
XM_036966477.1 mRNA upstream 44886 32244116 ~ 32263430 (-) True ccdc39
NM_001160591.1 mRNA upstream 64413 32263643 ~ 32267018 (-) True dcnl1
TU2434163 other downstream 26780 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 26780 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 26780 32157032 ~ 32165022 (-) False asip2b
TU2434105 other downstream 163244 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other downstream 163244 32023058 ~ 32028558 (-) False LOC110508982
TU2434271 other upstream 29176 32228406 ~ 32230214 (-) True LOC110508997
TU2435888 other upstream 1199317 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1840976 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1842208 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1842339 34041569 ~ 34042565 (-) False LOC110509052

Expression Profile