RNA id: NM_001160591.1


Basic Information

Item Value
RNA id NM_001160591.1
length 1387
RNA type mRNA
GC content 0.42
exon number 7
gene id dcnl1
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32263643 ~ 32267018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGCAGCTGGATGGGAAAAAGGGAGTCGGGCAATTACAAACATGAACAAGCTGAAGTCCTCACAGAAGGATAAAGTTAGACAGTTCATGATCTTCACACAATCAAATGAGAAGACGGCATTGACCTGTCTGTCACAGAATGACTGGAAACTAGATGTCTCCACAGACAACTTTTTCCAAAATCCAGACCTCTACCATCCAAATCTAAAGGGAGTGTTGGACAAGAAAAGGTTAGAACAACTCTACAACAGATACAGAGACCCACAAGATGACAACAAGATTGGAATAGATGGCATCCAGCAGTTCTGTGACGACCTGGGCTTGGATCCGGCCAGTATTAGTGTGCTCTTCATCGCCTGGAAGTTCCGGGCTGCAACACAGTGCGAGTTCTCCAGACAGGAGTTCATGGATGGGATGGCAGAACAAGGGTGTGACAGTATAGAGAAACTAAAAGCCCAACTACCAAAAATGGAGCAAGAGTTAAAAGACCATGGGAAATTTAAGGACTTTTACCAGTTCACATTTAACTTTGCAAAGAATCCTGGCCAGAAAGGTTTGGACTTAGAAATGGCAATTGCGTATTGGAATTTAGTACTGGCTGGAAGATTCAAATTCCTGGACCTGTGGAACAAATTTTTAGTGGAGCACCATAAACGATCAATCCCTAAGGACACCTGGAACCTCTTGTTAGACTTCAGCACAATGATAACTGATGACATGTCCAATTACGACGAGGAAGGAGCATGGCCAGTCCTCATTGACGATTTTGTGGAGTTTGCACGACTGCACATTGGGACCAAAAGCACCGCTGTCTAGGGACCGCCCAAACTCGGAGGAACGTCCATACGTTTGTTTATACAAAAAACACACAACCGAGGCGGAGAAACGGAGCACAGGGGACTGCACTGAGCTGAGATCTATGTTGCCTTTTCCAACCCTCAGGACTGAGATGTTTTACACAACAGACAATATAAAAGGCATATCTCCTCGTCGGTCGTCTTGTGGTGGTTTGGGATTTTATCTTTAGTATGGGGCTTTTTTCGTGTCAACTCTAGCCAACTGGAGAGGAGTCGCCATCCTGGACCTTACAGTTCCTGTCCCAGTGTTTAGTTGACACAGTCGAGGTTCACGTGAAGCAAACCGACACCCCAAAAAGACAAATACAATTGTATCGTATTCTAAACACGATGGTCCGTGAGGGAATGTCATTCTTTAAATATTAAATTAAATTTTAATACTTTGTGTGCATTCCTGCTATGAATATGAATTTTGTTTTATGAGACTTGTGTGACAGAACAGTACAAAAACATTTGATTGTAATTTTTGTTAGTTTTAATCATAATGCTATTCCAGTACAAATGTGTAAGGTAATAAATGTTTCAATTTT

Function

GO: NA

KEGG:

id description
K17822 DCUN1D1_2; DCN1-like protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2434272 lncRNA downstream 20119 32240882 ~ 32243524 (-) True LOC110508996
TU2434161 lncRNA downstream 76160 32157032 ~ 32187483 (-) False asip2b
TU2434162 lncRNA downstream 76160 32157032 ~ 32187483 (-) True asip2b
TU2434140 lncRNA downstream 234418 32023058 ~ 32029225 (-) True LOC110508982
TU2434137 lncRNA downstream 235005 32023058 ~ 32028638 (-) False LOC110508982
TU2434304 lncRNA upstream 689 32267707 ~ 32268032 (-) True G2129021
TU2434321 lncRNA upstream 30175 32297193 ~ 32297394 (-) True G2129038
TU2434324 lncRNA upstream 38281 32305299 ~ 32305562 (-) True G2129041
TU2434327 lncRNA upstream 42392 32309410 ~ 32309627 (-) True G2129044
TU2434300 lncRNA upstream 43858 32310876 ~ 32311370 (-) True G2129017
XM_036966476.1 mRNA downstream 213 32244116 ~ 32263430 (-) False ccdc39
XM_036966477.1 mRNA downstream 213 32244116 ~ 32263430 (-) True ccdc39
XR_002471383.2 mRNA downstream 20058 32241792 ~ 32243585 (-) False LOC110508996
XR_002471384.2 mRNA downstream 33385 32228425 ~ 32230258 (-) False LOC110508997
XM_036966209.1 mRNA downstream 61819 32191802 ~ 32201824 (-) True LOC110508994
XM_021589932.2 mRNA upstream 13885 32280903 ~ 32292193 (-) True LOC110509000
XM_021589933.2 mRNA upstream 45053 32312071 ~ 32332419 (-) False LOC110509001
XM_036966022.1 mRNA upstream 45053 32312071 ~ 32332419 (-) False LOC110509001
XM_036966023.1 mRNA upstream 45053 32312071 ~ 32332419 (-) False LOC110509001
XR_005040196.1 mRNA upstream 45053 32312071 ~ 32332419 (-) True LOC110509001
TU2434271 other downstream 33429 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 98621 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 98621 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 98621 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 235085 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 1131529 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1773188 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1774420 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1774551 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 1777672 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile