RNA id: XM_036966022.1


Basic Information

Item Value
RNA id XM_036966022.1
length 4612
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC110509001
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32312071 ~ 32332419 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACGTTTGGAAAGACTGTAGCAGGCTGCCAGGACTGCCCATTTTTGTAGGGAAAGTCACGTTACTGTGTCTGAAGCCGTTGGTTTCGAACCGCCTGGCTCTGTATCTCTAGCTATTATCTTTAAAATGTTCATACATTTCCTTGAGATATCAATTTTGCAATATTTGTAAATGGATAACATGGTTTAGCTTGAACACGAGGATTACAGCGGAAACCAACTATCACAAGATTTCAGACAAAGGCACTGGTAGCACAAAGGTCCATTGGCTGTTTTTGGCTTCAACACTGCTGACCCGGTTTCCCTGATAGTGTAGTGAGTGACACAACCTTCCTGGCCAGTCAACTCTTAACTCTTTCCTCAATCTGCCTACATAGGCACTGCTACATTTCCTTCACAACTTCCATACAACATTGATAGATTGCGGAGTTCCTCCTATGGATGGTGGAGCAATGAGCTTCTGAAAGACACTTGATCACATGGCTCCTATCCTGCGCTGACCCCATGGTTTAACCGCCAGGATTAAAAATGAGCATTAGCAGTGATGAGGTCAACTTCCTGGTGTACAGATACCTGCAAGAGTCGGGCTTCTCCCACTCGGCTTTCACCTTTGGCATAGAGAGCCACATCAGCCAGTCCAATATCAACGGAGCCCTGGTGCCCCCTGCTGCCCTCATCTCCATCATTCAGAAGGGCCTGCAGTACGTGGAGGCAGAGGTCAGCATCAACGAGGATGGCACTCTTTTTGACGGGCGGCCCATCGAGTCGCTGTCCCTGATCGACGCGGTTATGCCCGACGTGGTGCAGACGCGGCAGCAGGCCTACAGGGAAAAGCTGGCCCAGCAGCAGCAGGTGGGCAGCACCAGCGGCACCCAGGGCCTCCAACCTGGCGGTGCCAAGAACGGAGAGGGAGGCACCGCTGCCAACGGCGAGGAGAACGGCGCCCATGGCTTAGCCAACCACCATGCAGAGATGATGGAGGTGGACCAGGATGTGGAGATCCCCCAAAACAAGGCCATGGTGCTGAGGGGCCACGAGTCAGAGGTGTTCATCTGTGCCTGGAACCCCGTCAACGACCTGCTCGCCTCTGGgtctgggGACTCGACGGCGCGGATCTGGAACCTGAGTGAGAACGGCACGGGCAGCTCCACGCAGCTGGTGCTGAGACACTGTATACGGGAGGGAGGCCAGGACGTACCCAGCAACAAAGACGTCACCTCACTGGACTGGAATAGTGAGGGTACGCTGCTAGCCACAGGCTCGTACGACGGCTTTGCCAGAATATGGACCAAAGACGGTAACCTCGCCAGTACCTTGGGCCAGCATAAAGGTCCTATATTTGCCCTTAAATGGAATAAGAAAGGAAACTTCATCCTCAGTGCAGGAGTAGATAAGACCACCATCATTTGGGACGCTCACACAGGAGAGGCCAAGCAGCAGTTTCCCTTCCACTCTGCGCCGGCCCTGGACGTGGACTGGCAGAGCAACAACACGTTTGCCTCCTGCAGCACGGACATGTGCATACACGTGTGTAAGCTGGGCCAGGACCGGCCTGTCAAGACTTTTCAGGGACACACGAATGAAGTGAATGCAATCAAGTGGGATCCCACGGGGAGTCTGCTGGCCTCCTGCTCTGACGACATGACACTTAagATTTGGAGTATGAAGCAGGACTCGTGTGTCCACGACCTGCAGGCCCACAGTAAGGAGATCTACACCATCAAGTGGAGCCCCACGGGGCCCGGGACCAACAACCCCAATGCCAACCTGATGCTGGCCAGCGCGTCGTTTGACTCGACGGTGCGTCTGTGGGATGTGGAGCGAGGCGTGTGCATCCACACGCTCACCCGCCACCAGGAGCCCGTCTACAGTGTGGCCTTCAGCCCCGACGGGCGCCACCTGGCAAGCGGCTCCTTCGACAAGTGTGTCCACATCTGGAACACACAGACGGGTGCTTTAGTCCACAGCTACAGGGGAACGGGGGGCATCTTCGAGGTGTGCTGGAACGCCACGGGCGACAAAGTGGGAGCCAGTGCATCAGACGGATCGGTTTGTGTATTAGACCTGAGGAAATGACGCTCGTTTGGGGAGCCATGGACCGACTACGAATGTGTACATAGCCAAAATGACTGTCCCTGCCTGTCGTCTACACTGCTGTAGTCCCATCAGAAGCCATGGCCTGccatcacaaccaccaccatAAACACTTAAATTACACCTCCAGAGAAGGGGgtctgccacccccccccccaccccaccccaccccatcaaGTCACTCAgacccacaggagagagaaattacTTTTACGTTCAGAGAATTTAAAAATCCCAAAGGGGACCCATTGCATACATACCAAAATATCTGCTACTTTGTTTactttgtttatttttatcctttaTACCAGAAATTAGACATGTCTTTTTTTCCCCTCACGTCGTTGGTGTGTGCATATTGTACATGTCAGCATGTTTTGTCGTCCTTTTGCCGTAGGTTTGTGTGTTACATGTCGGGGAAAGAGTGGAGAGGTCAGTAGGCTTTTTGTTTCTTTTACCATTTGGGTTTGAAACGGTTTATTGGGAgaaatccattcactttgacactgtactttttttgttgttatggCTCAAGAAAACATTGAACAAATCTATATTTCATAAGTTGAAATGGGTTAATTGTAATTGTAATTTTGATGCTTGTTTTTCAGTTTGCCCAAAATTGTTTGTTTAAAAAATTGTCAGAGAGCATTTAGTGAGGAGGAATGCCCAATGTCTAATTTTGCTTGTTTACCTTGAGAAATGGTTTCAAGTGTGAACTGTTAGATCTCTGGACTAAAGATCATCACCGTTAGCTACTACATAAAATATGACAGGATGGGGTTAAGGACATGTTTAGGTTTCAGTGTTATGTAGAAGGAAAGGCTGATCGTCCATCTGTGCCTCCGTGGCTCTTTTAGCCAGAACACAGGAATGGCAGTGCTTTGGGTAGCTCATGAATGAATAGGACACAGGACAACCCCCATACAAACGCTGATGTCAAAGTTAGCCGGGAGTTTTCATACCCGAAATTGGTCAAACATGAGATTTTGTCAACGTTCCAAGACTACTTTTGAGTTGTAACTTCTGACCAACTTTGATTTTGGAGTGAACCATTGTTTCAAGTGTTCTGTTTGAGGACGCACTGCTGTGTCTGCTCTTAGGTCATTGTGGATGATTGATTTTCTACCCAGCACCAACACTTGGGAGACAGGCTGCGTCAAGGCCTATGCATGGATAGATGGTGCTTATTTTTTTGTTGGTGGTCAGAAGGTGATGTTTTCTAGGCAGGGAGATGAGAGGTGGACTTTGGAACATATGACTTGACGTAACATTCTAactacatataatatatatatatatatgtgtgtgacaTCACAGGGGATTCTTTTTGTATGGCTCTTGAATGCAAGTTTGGTTTTGAGAACTTCTCCATAACTCTCGAAGACACGCTTGGAAATGTGTTATTCTTATGCATCATGTGGGTCTTTCACCATGAGAAATGGTTCTTTATAAAATACCATTAAACAGTCATAGCTGTAAAAGAGCAGCCCTAAGAATGGGTTTGTTAAGTTATTTTCTGCACTTAAGAATAATGCAAAACAGGGACATGTGTTCAAGcaagggttggggtcaattccatttggATTCATTCTGGAAGTGAACTCCCAATTCAAACATTGGAATAAAATATTAATAGAAAATAAATggcaactttttttttcttcccgtTATTGAATTGGAATTTGAGCACTTTAAAATGGCTTTGACCACCAACCCTGGTTGGTACTTCCAGACGCAGGATAATCCTGTTTAATATCTCTCCAGTAGCTGAACGCGTGCAGTCGTTTCTGTGAAAAAGCGAGGGACAATAGTAGTTTCTGAACTGTTGACTTGTTGGGTACACATTGGATCCAACCCAACTTCATGGCATTCCAACATACCATCTTTTAGCCCTAGCTAACATCCAGTGGCTTTAAAAACACCCGTGTTTTATTTAACAAAAACAATTATCCAAAAGCCTCCTTTGCTCAGAAAGAATGTCACTTGTTTTTACAAATGCATTTTGTACAGAAGCTAGCTAAGAGTATTTTGAAGTTTGCTTTAATATAACCAACAGTGAGTGGATCGTACCATGAAGACTTATTAGGAAGTCTGACAGTGGAATGGTATTTTATAATGTTTGTTTTAAAATGATCTTTTTACACTGCATTCAAGTGTTTGGTATTTCTTGTTCCTACCTACAGTACTAATTCTCTTTGCTATGCCTAAAAAGCTCTTGAAGGTTTTGTACTCTTTGAAAAACTTTTATAATTCTGATTTATTTGTAGCTATGTACGCAAAAATGAACAAGAACAATAAATCTAAACTTTAATGTGGATGTATCCATAACACCCTGGACCATGTAGGTAAATACCAGTGTGcagattttgtttttttgtttcattttgtCTTTGCCCTCACCCATGTTattttctctcactcacacagatGCTGAGACTCTGCAACCTACGCATCTGACTGTTGTAATATCAATCAGACCTTTGAAACGTCTAgaataaaaaaatctattttgataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2434300 lncRNA downstream 701 32310876 ~ 32311370 (-) True G2129017
TU2434327 lncRNA downstream 2444 32309410 ~ 32309627 (-) True G2129044
TU2434324 lncRNA downstream 6509 32305299 ~ 32305562 (-) True G2129041
TU2434321 lncRNA downstream 14677 32297193 ~ 32297394 (-) True G2129038
TU2434304 lncRNA downstream 44039 32267707 ~ 32268032 (-) True G2129021
TU2434343 lncRNA upstream 28923 32361342 ~ 32361579 (-) True G2129060
TU2434388 lncRNA upstream 42246 32374665 ~ 32375095 (-) True G2129095
TU2434392 lncRNA upstream 47382 32379801 ~ 32425441 (-) True G2129099
TU2434400 lncRNA upstream 67034 32399453 ~ 32402732 (-) True G2129103
TU2435352 lncRNA upstream 172917 32505336 ~ 32505871 (-) False G2129919
XM_021589932.2 mRNA downstream 19878 32280903 ~ 32292193 (-) True LOC110509000
NM_001160591.1 mRNA downstream 45053 32263643 ~ 32267018 (-) True dcnl1
XM_036966476.1 mRNA downstream 48641 32244116 ~ 32263430 (-) False ccdc39
XM_036966477.1 mRNA downstream 48641 32244116 ~ 32263430 (-) True ccdc39
XR_002471383.2 mRNA downstream 68486 32241792 ~ 32243585 (-) False LOC110508996
XM_036966281.1 mRNA upstream 129765 32462184 ~ 32514866 (-) True LOC110509003
XM_036966767.1 mRNA upstream 266009 32598428 ~ 32614505 (-) False cpdp
XM_036966766.1 mRNA upstream 266009 32598428 ~ 32614539 (-) True cpdp
XM_036966770.1 mRNA upstream 295881 32628300 ~ 32655437 (-) False LOC110509006
XM_036966769.1 mRNA upstream 295881 32628300 ~ 32655443 (-) True LOC110509006
TU2434271 other downstream 81857 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 147049 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 147049 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 147049 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 283513 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 1066128 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1707787 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1709019 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1709150 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 1712271 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile