RNA id: TCONS_00057331


Basic Information

Item Value
RNA id TCONS_00057331
length 1330
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_028591
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12240134 ~ 12241573 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGGATTACCAATTTCCACATGGTTGTACAAGGACGTGAATGCTGTTACAAGTTGCAATTGCAATTGAATACAAGTTGCAATTCCGATGACATTATTGCAGCTGAATATACAGCCTTTAATCCGTTTTGGTGTCTTATCTCCATCATTTGAGCGTCTCGAAGCAGGGAACTAAAGTCTGCAGTTAAATGGCTTGTGTTTGTGCCGCTCGTCATCAACAGCAGCAGGGTCAATACTCATTGTCTCAAGAGGCCTGATGGAGAACACACACAAACCCATCCTAATCAGAGGTAGTTATTCATAGCAGCGCCCTCGCTCTAAATGCATTCATGAAGTATTCATCAAACCTCAAACATAGGCTTTTCATCTCTTTAAATGAGCCTgtaagttgtttttgttttgcactCTTTCTTGGCCTGCCTATCTAGTGCAAGAGCTAGTTAGTTATTGCCGCTGTCATTTTTTTCCTTCTGTTATCACTTTTGATGAGTTTGCCCTCTATTTTTTTCAGCCTTGTACTTTTCTCGCTCGACTCTGTGGATCAGTTTCAGCAGTTTGCACAGCTGATCAGATAATAGCCTCGTCGTATCTGTTGCCATGGTGAATTTACTTGCCTTGAATGTCAGCAAGTGAACTTTACTGATCTCAGAGTCTTACCGCCTTGTCATTACGCTTTTTgctagttaaacatttttatttggatTATTTTGTAATGCTTTAAGATGGCTTTCAAGTTCTTAATATCAATTAAAGCATTACAATTGTAACCAAAAAATGTAGTATTTACAAATTGGGTTAATGTTTACAAAATGCCTGGAAatctaaaacatatttaaatttaggAGGCAAAATTTGCCCCATAATTGATTTCTAGAGACTTTTCATGTCAAATATTCTCTGTTTTCACGGTTTACTTAGCTGAACACATCTTGAGGTCAACAGTACTTTCTTAAAGCTGCCAAAAGTGCAAATACAAAGTGCAAAGATAAAAATACAGTGCTATAAATTGATTCTTACATTCATTTTTCACATTTATCTTTAATCATGAGAGTCGTAATAGCTCCATTTAAATCTACAGGGGCGTTTTTTACCCCTTTATTTgaaatttgtgtgtttttttttaaattatctaccattaatttgtgaccctggatcacCTCCACATTTGTCTTGATGTGATCAGGGTTTCTGCGGGTTTCACCAAggtaaagacttttttttagactgttatgaatgaaattttagacgtATACAGGGTTTAAATGCTAAGGATTATTTTTGAAAGTCCCAATTGGAAAATGTTTACTTGCCTTATCAAAAActgattataat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058121 lncRNA downstream 1323 12230026 ~ 12238811 (-) True XLOC_028590
TCONS_00058120 lncRNA downstream 15309 12221159 ~ 12224825 (-) True XLOC_028589
TCONS_00055455 lncRNA downstream 15324 12217519 ~ 12224810 (-) False XLOC_028589
TCONS_00055454 lncRNA downstream 15338 12170039 ~ 12224796 (-) False XLOC_028589
TCONS_00055453 lncRNA downstream 15503 12122794 ~ 12224631 (-) False XLOC_028589
TCONS_00058122 lncRNA upstream 47192 12288765 ~ 12290321 (-) False XLOC_028593
TCONS_00058123 lncRNA upstream 47192 12288765 ~ 12290543 (-) False XLOC_028593
TCONS_00058124 lncRNA upstream 47192 12288765 ~ 12297450 (-) True XLOC_028593
TCONS_00055459 lncRNA upstream 80245 12321818 ~ 12323159 (-) True XLOC_028594
TCONS_00055467 lncRNA upstream 474349 12715922 ~ 12717752 (-) False XLOC_028598
TCONS_00055451 mRNA downstream 134095 12102267 ~ 12106039 (-) False XLOC_028588
TCONS_00055452 mRNA downstream 135713 12103832 ~ 12104421 (-) True XLOC_028588
TCONS_00055449 mRNA downstream 138098 12075040 ~ 12102036 (-) False XLOC_028587
TCONS_00055448 mRNA downstream 138109 12074776 ~ 12102025 (-) False XLOC_028587
TCONS_00055445 mRNA downstream 199789 12033873 ~ 12040345 (-) False XLOC_028583
TCONS_00055456 mRNA upstream 2125 12243698 ~ 12286067 (-) False XLOC_028592
TCONS_00055458 mRNA upstream 75888 12317461 ~ 12323228 (-) False XLOC_028594
TCONS_00055460 mRNA upstream 140162 12381735 ~ 12388535 (-) True XLOC_028595
TCONS_00055461 mRNA upstream 159573 12401146 ~ 12477278 (-) False XLOC_028596
TCONS_00055462 mRNA upstream 171122 12412695 ~ 12477278 (-) False XLOC_028596
TCONS_00055433 other downstream 631851 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 633279 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055389 other downstream 1578457 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 3652226 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 4098668 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055457 other upstream 33541 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 171846 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 354107 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055473 other upstream 536136 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 665408 12906981 ~ 12914170 (-) True XLOC_028606

Expression Profile

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