RNA id: TU2434597


Basic Information

Item Value
RNA id TU2434597
length 1882
RNA type TUCP
GC content 0.47
exon number 4
gene id pfn2l
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32631289 ~ 32700844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCTGATTACATTGGCTTTCTTTACTGCCCGAGCCAAGACGTGTGTGAACGTCGAAGTGGGGGGTACAATTAGAGACACTCAATTGATCCGTAAGCAGCGCAAAATCGGCTGTAACTGTCTTATCCCATAAACTACACTTTGGAGTTCATAGGGAGCTGTATATTTCAACATGTCTTGGCAAAGCTACGTGGATAACCTGATGGCGGATGGCAGCTGTCAGGATTCCGCCATTGTTGGGTATACGGACGCCAAATACGTTTGGGCAGCACATGCCGGTGGTACTTTTAACAACATAACGCCTCAAGAAATTGATGTTCTCATTGGAAAGGACAGGGCTAGCTTCTTCACCAACGGCATGACCTTGGGTTCGAAGAAGTGCTCGGTCATCAGAGACAGCCTCCATATTGAAGGGGACTGGACAATGGACATCAGGACAAAGAGTCAAGGAGGAGAGCCAACATACAACGTCACTGTAGGCAAAGCCGGAAAAGTCTTGGTTCTTGTAATGGGCAAAGAAGGGGTCCACGGAGGTGGATTGAATAAGAAGGCATACTCAATGGCAAAATACTTGAGGGATTCAGGGTTCTAGTGTCACCAAGCTTGCTTAGTTAAAATTGAGGGACAAAAAGAAGAGAAAATAAAATATTGCTGTTAAGATTTCTCCTGCAAGCAGTCAAATGTCGTGGAAACTTTAATAGCAATGGAGAGTAATGGTGGCGGTAAGGTCCTATGTCACCTTTATCCCCACTTTTAGCGGGGAAAAATACTTTCTTGTCAATTTGTCATTTTTCCTTTTGTTTCCTTGTGTGCTCCAGCATTGGTTTTAGTCATGGGAAAAGAAGGGGTCCATGGCGGACAGCTCAACAAGAAAGCATTTACTATGACTGAGTACCTGAGGAAGTCTGGATTTTAAGGCAGCCTGTCTACCCACCTAGCAGTTCCCTCTGGCTCCCCATCATTGTGTTGACAGTACTTCCCGGATTAGTTAGCAGATGCATTTCTCTCCCAGTTCCATTTTCATGTACACCcttttatatttttttcatgtgaattcattttttttttttttttttttttTAAAATGTCATTCTTTATTACCCCTAGATACAGAGCAGTTCAGAGTACATACAGCCATTGCACATTGAGCGTAGTAAATGAACCCTTATTACCTACATTTTAACCCTTACTTGTAACTCCCACATGTTTAGAACCATgacaacccccctcccccccccccgaaCAAATAGCTAGTAAAGATATAGTAAATCTCTGCCTAACCAATTAATGATGAAGGTCTTGTAAAAGCAAAATGAAAAGCAGACTCAAGCCCTTATGTGGTATTCTCTGATCATGCAGTGGGCCCAACGCATGCAGTTTGATGACTGCGACATTAAAGAGTCTGTGCTTTGTAAAATCTGAACGCTTCTCAGAAAAAAATCTTCTTCCCTGGACACACTGGCACAGGGACAAGAGGTGCAGACACAATAGCTGGGCTGTCTGGGGCTTCCCTCTTCACCACCCCAGATACAACAGGTGCGTCCGTGCCTACAACTGGATCGACTACGAACACAGGGGCCGCTTCGGTACCCACAGGGACCACCACCACGGGGACCACAGGCACTATGGACTCCTCGGACTCGCCAGACTCGCCAGACTCGGCAGACAGAAGGCCGCTGAGGTCGGGGTCGTGGAGGGCGGTGAGTTTGTGGTGCCTCAGGCCGTGGACCTTGGGGAGGTTACCAGCGTGGACGTGGACCACTGGCGCAGGCACCGGGACTGTGCCATTGGTGTCCACGATAGGCATCTGTACATTAGAACGAGAGACAGGTCGTCAAAGTACTGTGTCAGTGCAATGGTTTGTTTTCATGTGGCATTTATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2434633 lncRNA upstream 41146 32632050 ~ 32632657 (+) True G2129310
TU2434584 lncRNA upstream 62040 32611013 ~ 32611763 (+) True G2129271
TU2434572 lncRNA upstream 81657 32591894 ~ 32592146 (+) True G2129262
TU2434551 lncRNA upstream 110106 32563462 ~ 32563697 (+) True G2129242
TU2434039 lncRNA upstream 315457 32358142 ~ 32358346 (+) True G2128835
TU2434679 lncRNA downstream 21309 32722153 ~ 32722430 (+) True G2129353
TU2434681 lncRNA downstream 25737 32726581 ~ 32726881 (+) True G2129355
TU2434682 lncRNA downstream 26359 32727203 ~ 32727638 (+) True G2129356
TU2434683 lncRNA downstream 26954 32727798 ~ 32728930 (+) True G2129357
TU2434684 lncRNA downstream 30452 32731296 ~ 32731575 (+) True G2129358
XM_021589939.2 mRNA upstream 50996 32614567 ~ 32622807 (+) False LOC110509005
XM_036966768.1 mRNA upstream 50996 32614569 ~ 32622807 (+) False LOC110509005
XM_021589938.2 mRNA upstream 50996 32614573 ~ 32622807 (+) True LOC110509005
XM_021589937.2 mRNA upstream 83922 32581133 ~ 32589881 (+) False nmur1b
XM_021589946.2 mRNA downstream 9751 32710595 ~ 32718847 (+) True LOC110509011
XM_036966298.1 mRNA downstream 58322 32759166 ~ 32784289 (+) False zbtb41
XM_036966336.1 mRNA downstream 113860 32814704 ~ 32836438 (+) False LOC110508224
XM_036966380.1 mRNA downstream 172087 32872931 ~ 32911233 (+) False LOC110509022
XM_036966379.1 mRNA downstream 202750 32903594 ~ 32911932 (+) False LOC110509022
TU2433942 other upstream 399423 32269318 ~ 32274380 (+) False G2128753
TU2433943 other upstream 399423 32269318 ~ 32274380 (+) False G2128753
TU2433944 other upstream 399423 32269318 ~ 32274380 (+) False G2128753
TU2433832 other upstream 618148 32053769 ~ 32055655 (+) True LOC110508984
TU2433828 other upstream 618712 32053769 ~ 32055091 (+) False LOC110508984
TU2434698 other downstream 48084 32748928 ~ 32749568 (+) True G2129371
TU2434604 other downstream 83024 32783868 ~ 32803922 (+) False zbtb41
TU2434606 other downstream 84127 32784971 ~ 32803922 (+) True zbtb41
TU2434827 other downstream 357453 33058297 ~ 33069170 (+) True LOC110509024
TU2434998 other downstream 607254 33308098 ~ 33308991 (+) True G2129639

Expression Profile