RNA id: TCONS_00055457


Basic Information

Item Value
RNA id TCONS_00055457
length 808
RNA type processed_transcript
GC content 0.50
exon number 3
gene id XLOC_028592
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12243698 ~ 12286067 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTAAGATGGTGGTTAGGAGGCACTGTCGCTCTACAGAGAGGCTGTAACACACAAGACTTGGTGTTTTCGCATCAAATCACACAGGAGCAGGGACAAACCATCCCAGGAATTTATACTGTGACCTGCTGTGCTAGACCTGAGCCGCTCACATAGATTGTATTTGCTGTGAATCTGACTGTTCACATAGACAGGGCTCTGCCTCTAAACTGTGAGAACACACCGCTCTTTTCTCTGCGTCGCGTGCCATAGGATGTCCTGCAGCCCTGAGGTGAAGGAGGACCCCATGGAGTGCCCACTGTGCATGGAACCGTTGGAGATTGATGACGTCAACTTCTTCCCCTGCACCTGCGGCTATCAGATCTGCCGCTTCTGCTGGCATCGCATACGCACAGACGAGAACGGCCTCTGTCCGGCCTGCAGAAAGCCCTATCCAGAAGACCCTGCAGTATACAAACCTCTCTCTCAGGAGGAACTTCAGAGGATAAAGAACGAGAAGAAGCAGAAGCAGAACGAGCGGAAACAGAAGATCACAGAGAACCGCAAACACCTCTCCAGCGTGCGAGTCGTCCAGCGAAACCTGGTGTTTGTTGTGGGCCTTTCACAGAGACTCGCCGACCCTGAGGTGATTCAGCAAAACACACAATCTTTCCTGACCTCTGTGTAATTGATGCTCTTCACACTCAAGATAAACGACTTAGGAAGTCCACTGCTCCAAAAACTGTGACATTCATCTCACTCAGCCGCTCTCGAAATTCATCCACACATGGTTTCTGATGCTTTATAACACTTTCACTGCAAGCAAGATA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0030014 CCR4-NOT complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1164 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be part of CCR4-NOT complex. Orthologous to human CNOT4 (CCR4-NOT transcription complex subunit 4).

Ensembl:

ensembl_id ENSDART00000145032

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057331 lncRNA downstream 33541 12240134 ~ 12241573 (-) True XLOC_028591
TCONS_00058121 lncRNA downstream 36303 12230026 ~ 12238811 (-) True XLOC_028590
TCONS_00058120 lncRNA downstream 50289 12221159 ~ 12224825 (-) True XLOC_028589
TCONS_00055455 lncRNA downstream 50304 12217519 ~ 12224810 (-) False XLOC_028589
TCONS_00055454 lncRNA downstream 50318 12170039 ~ 12224796 (-) False XLOC_028589
TCONS_00058122 lncRNA upstream 2699 12288765 ~ 12290321 (-) False XLOC_028593
TCONS_00058123 lncRNA upstream 2699 12288765 ~ 12290543 (-) False XLOC_028593
TCONS_00058124 lncRNA upstream 2699 12288765 ~ 12297450 (-) True XLOC_028593
TCONS_00055459 lncRNA upstream 35752 12321818 ~ 12323159 (-) True XLOC_028594
TCONS_00055467 lncRNA upstream 429856 12715922 ~ 12717752 (-) False XLOC_028598
TCONS_00055451 mRNA downstream 169075 12102267 ~ 12106039 (-) False XLOC_028588
TCONS_00055452 mRNA downstream 170693 12103832 ~ 12104421 (-) True XLOC_028588
TCONS_00055449 mRNA downstream 173078 12075040 ~ 12102036 (-) False XLOC_028587
TCONS_00055448 mRNA downstream 173089 12074776 ~ 12102025 (-) False XLOC_028587
TCONS_00055445 mRNA downstream 234769 12033873 ~ 12040345 (-) False XLOC_028583
TCONS_00055458 mRNA upstream 31395 12317461 ~ 12323228 (-) False XLOC_028594
TCONS_00055460 mRNA upstream 95669 12381735 ~ 12388535 (-) True XLOC_028595
TCONS_00055461 mRNA upstream 115080 12401146 ~ 12477278 (-) False XLOC_028596
TCONS_00055462 mRNA upstream 126629 12412695 ~ 12477278 (-) False XLOC_028596
TCONS_00055463 mRNA upstream 127139 12413205 ~ 12477224 (-) False XLOC_028596
TCONS_00055433 other downstream 666831 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 668259 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055389 other downstream 1613437 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 3687206 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 4133648 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055464 other upstream 127353 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 309614 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055473 other upstream 491643 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 620915 12906981 ~ 12914170 (-) True XLOC_028606
TCONS_00055495 other upstream 689150 12975216 ~ 12978899 (-) True XLOC_028608

Expression Profile

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