RNA id: XM_036966228.1


Basic Information

Item Value
RNA id XM_036966228.1
length 1577
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC110509016
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32798109 ~ 32803677 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATTACCTTGGTTGAATTTAAAAATCCCCAACTCAGACTCAGACTCCAGTTAATTCATTTCTCAGTGTACATGTAACACCAGAGGACAGAGAATGAAGGAAATACCACTGTCTGTCATTATTGTACTACACATCTGGTCCTACGGTGTTAAAGCTCAAGAATCTGGAAAAGGCTGCCAAAGACCCCAACTGGACAATGGCTTTGTTGACCCGGAGCAGAACATGTACCAGGATGGCATGACTTTGACTTATGCCTGTGATAAAGGTCTGAAAACACCAATGGAAGGCTGGTGGGGGATGATTACATGTGAGAATGGTAGATGGTCTGATACTCCTCTGTGTACGGCCAGTCGTTCTTGTGATGCACCTCCTCAAGTGAACCATGCAACCGTTGTTCAACAATATCAAAACAACTTTAGTAATGGATCAAAAGTGGTGTATAAATGTAAAAGATCCTACATAATGGAAGGGAAATCAGATGTAGTCTGCCTTTTAGGAGAATGGACCTCAGCCCCCACATGCAGTGATGAGGCCTCACCCAATGTCAGACCCTCTGCCAGACCACAACCTGGTGGTCCATTTTTACCTGTTGATAGGTGTGGAGAGAAGCCAACAGTTGATAATGGGGATTTTATCAGTGACTCTGACAGAAATCGAATGGCACTGACCTTCACATGCATTAACTATTATAAACTTGTGGGCCCAGAGCAAGTGATGTGTCATAATGATCAAACGTGGTCAGAGCTCCCCATTTGTAAAGCTCCCTGTACCATTGACAAAATGACATTTGACATGCTGGATCTTACAAAAGATATGtttgtgaaggaaggagagagtcaGACATTTCTCTGTAAAGTAACTGATTATTATGAACGACGTCTTGTTGCTGATGTTCGATGTCAGAATGGACGAGGGGAAATTGGCAGATGTACATTGGGCTGCAAACTGGAAAAAAGGGTTAAATATTGGCTGGATCTTACACAGGATATGTTTGTAAAGGAAGGACGTCAGACATGGAACTGTAAACAAACGGATTACAGGGGTCGTCGTCTTGTTGCAGATGTTGAATGTCAGGGAGGATATTTAACCGTACGCAGTTGTTACCAGCTAAACTAATATTTGGCCTGGTGAATCAATGCAACAAACCCAAAGCTGCAGCAAATCCCCTGGAAGAGAGGACTTCCCACGTTGGCCACCAATCAAGATCATGATGTGTTTGATAAATGTGCTTTTACATTTGGTTCATGATATGGAATCTGTCTCATAACACAGGGGGTTAGTAGGggagcagagaggaaaggaggccCACCATCTTAGGATAGGAGGCTGTCTGACAAGATTCAGACAGTCATTCTGAATTATTCAAAAGAAATGAAAAATACATGTTGAACATAATAATGGGAAGGTTGATGAAACAGTTGATCAGCAAAACATTTGATATTGATCCTCTATTCATTTAAAGCAGCAAACTACTGGTAGTCAATGGCAGTCAAATCAATAGAATGTACAGTATACAATGGACATGGATTCATgtagaaaatgtcatggcttggATCTATAAAAGAGATATAAttaga

Function

GO: NA

KEGG:

id description
K23815 CFHR1_2_3; complement factor H-related protein 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435392 lncRNA downstream 65819 32727777 ~ 32732290 (-) True G2129953
TU2435511 lncRNA downstream 72343 32725294 ~ 32725766 (-) True G2130060
TU2435509 lncRNA downstream 73639 32723971 ~ 32724470 (-) True G2130058
TU2435506 lncRNA downstream 77224 32719237 ~ 32720885 (-) True G2130055
TU2435437 lncRNA downstream 232901 32565005 ~ 32565208 (-) True G2129998
TU2435539 lncRNA upstream 18349 32822026 ~ 32822820 (-) True G2130086
TU2435541 lncRNA upstream 20716 32824393 ~ 32825566 (-) False G2130088
TU2435543 lncRNA upstream 20716 32824393 ~ 32825566 (-) True G2130088
TU2435544 lncRNA upstream 22455 32826132 ~ 32826947 (-) True G2130089
TU2435403 lncRNA upstream 26340 32830017 ~ 32835141 (-) True G2129964
XM_036966227.1 mRNA downstream 2383 32790153 ~ 32795726 (-) True LOC118944826
XM_021589956.2 mRNA downstream 9894 32785906 ~ 32788215 (-) False LOC110509017
XM_021589957.2 mRNA downstream 9894 32785906 ~ 32788215 (-) False LOC110509017
XM_021589958.2 mRNA downstream 9894 32785906 ~ 32788215 (-) False LOC110509017
XR_002471391.2 mRNA downstream 9894 32785906 ~ 32788215 (-) True LOC110509017
XM_036966230.1 mRNA upstream 1848 32805525 ~ 32812010 (-) False LOC110509015
XM_036966232.1 mRNA upstream 1848 32805525 ~ 32812010 (-) False LOC110509015
XM_036966231.1 mRNA upstream 1848 32805525 ~ 32812024 (-) True LOC110509015
XM_021589960.2 mRNA upstream 71762 32875439 ~ 32919614 (-) True LOC110509019
XM_036966377.1 mRNA upstream 116243 32919920 ~ 32932160 (-) False ro60
TU2434271 other downstream 567895 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 633087 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 633087 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 633087 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 769551 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 594870 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1236529 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1237761 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1237892 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 1241013 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile