RNA id: XM_036966377.1


Basic Information

Item Value
RNA id XM_036966377.1
length 3468
RNA type mRNA
GC content 0.42
exon number 8
gene id ro60
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32919920 ~ 32937170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCGGATTGGTACAACAAACAGGACGCCATGGGTCTGGCTCTGGCGGTGACCAAGTATAAAACGAGAGAGGGCTGGTCGCATCAGGATCTACTCAGACTCTCCCATGCCAAGCCTGCTAATGAAGTAAATACGTTATGAAAGGATGGAAGGAGGTCCAGGGGGCGTACGCCGACAAGGAGAACTCGGAGGAGGTGATCAAAGTCCTCTCATACCTGGAAGCGGTTGAGAAGGTCAAACACAGTGCAGACGAGATGGAGGTCAGCCATCTAATAGAGGAGCATAGTCTGGAGCGGGAACAACTTCTGACAGACCACCTGAGGTCCAAAGTGGTATGGAAGGCATTGTTAAAGGAGATGCCCATGGAGTCAATGCTAAGGACCCTGGGTAAGATGACCGCAGACCAAGTCCTGGAACCAGGAAGCTCAGACGTGGCAGAGGTGTGCGAGAGGATCCAGAGTGAGGCGGCTTTAAAGAAGGCAAAACTCCACCCTTTCAGCGTCTTGACAGCCTCGGAAAACTACAAAAGGGGCCAAGGCAACCGGGGAAAAGTGAAATGGGAACCAAACGTTGACATCATAAAAGCGCTGGACTCTGCTTTCTACAAATGTTTCACAAACGTGGAGCCGGCGGGGAAGCGCTTTGTGGTGGCGGTGGACATTAGCACATCACTGAGCAGCATCGTTAAGGGGACCTCCGTCAGCACAGCTGTAGCGGCTGCAGCCATGACCATGGTTTTTGCGCGGACGGAGGCAGAGACACAGGTTATGGCCTACTCTGAAGGAGCTATAGTTCCTTGCACCATCACTGAAGGCATGTCTCTTCGACAAGTAGCAACCGAGCTGGTCAAGATCCCCAGTGGTTATACAGACTGCGCTCTCCCCATCCTGTGGGCCTCGGAGAAGAGGATCACTGTGGACATGTTCATCATATTCACCAACAGTGCCTGCTGGCACGGCGAGGCCAATCCAACGGAGTGTCTGAGGATGTACAGACATAAAATGGGTATCTTCTCCAAACTTATGGTGTGTGGGTTGACCTCCAACGGCCTATCCATCGCTGACCCCGCCGAGGACAGGGGCATGTTGGACCTCTGCGGCTTTGACCTGGGAGCCATAGAGGTCATCCGTAACCTAGCCCTGGACCTGATCTGAGAACAGATTCTGGACAGTGCAAAGACGAGAAAGAAAAATATGGAGAGAATTGGTGGAAATACCTTGAAATGGATGTGGCTTGAAACGACGCAGAGAgcggatttttattttattttttaaagttgaTATTTACAATAACGATTTCTTCAATTTATCATAAATATCATGACCACAACAAAAATGATACGGTCTCCCTATTGGTCAtgttgagaggttagcatgtcttgggggtctGATGCATAATGTGCTTTCATTTCTAACCAGTAAAACATAGGAAAATACTCTCAAATAAAAAGTGACATCTGTACTTtttaggctcccgagtggcacagcctctccgtgctagaggtgtcactacagaccctggttagattccaggctgtatcacaatcggctgtgattgcgagtcccatagggcggtacacaattgtcccagcgtcgtctgggttagagtttggccggtgtaggccctcgttgcaaataagaatttgttcttaactgacttacccagttaaataaatcaaataaatactcACACCTCATATCTAACATTTGAGCTCAAATCCAAAATACTGGAGTATTGAGACAAAATTCAAAGTTTTAGCTTATGTAAGAAGGAATCCCTGTACACAATTACCACTGGAGGATGGCTCaaaaataatggctggaacaccGTTTGATACCATTTCACTGTTTACACTCCAGTTATTACTACACGCCTGTCCaccccaatgaaggtgccaccaatctcctttGCTATGTTATAGCAAGTTTGATGTGAACATGGAGCCCTTTTTATAATCTGTTCATTTTTCATCATTTAGCAAACTCACTTATCCTgtgtgacttacaggagcaaatCAACAGATATTTCTCTTAGTCTgttcagggattcaaaccagtgactttttggttactagcccaatgtgCTTAACCGCTAGGCAACCTGCCTCCCCTTGTCCCTTTTGTCTTCTTCAATTGGTCTAATCACTATATAGAAGACTAACCAACTTATTTTGTTTGATtgcagtatatatttttttgttttttttattaggTCAAACTCATAATAGAATAGACTTGGTGCACTTAAACATGTAACATGCGAATCCATTTAGTTTATTTTGCTTTGTCACAAGTCAAAACAAGGAAGTATTTGACGCCAAGAGATAAGGGAGTGACTGTCGTCATTGTCACTGGCAGTTTTTGGCAAACCTGCAAAATTGGTTTAttccctgggtcatgttcattagggcagaCGTTCGAAAAGGTTTTAAAATCTTGTacaatggaaaattaaaaatgaacATTTCAATTGCTTTTCTATTTGTTACGTAATGATCACGACCCTGGAATCTATTGATTTTATGCATTACCAATGGTTTTTTTCTATTGCTGTATCATGTTGTTGAAGGTCAAAACAAGGCCATTTAGTAGTGTGAAGACTGAAGCTGCTAGACGCACATTTAAAGTATTCCAGTGTCGGAGGTTTGTGATAAACAAGCACTAATGATAGAATGTCAGTTATACAAATACTCACTAATGTTCCATAGAAACTCACCAGCTACTTTTCCTTTGTAATAGATCCCACTGAATGTACCTTTTTGTCATACTTGTGTAACACtgtagatttttaaaatgctttattCTTCAAATATTGAATAAATAAAATGGGATAATACTGAAGATGCTTTACCTTTTAGCAGTCAATTCAATGGGGGAATGATGGCTGACGCTGAAATAGAGGAAGTGGAAAGTATTAACTGGTTTATTGAATTGTTATTTTCTGTCTTCTGTCATTTCAGATCAACCCTAATTTAGACAAAACAAATTCAGACCTGGTAACtgatttctaaaaacctttttactttgtgttgatttcatctgATCCAATATAAAAGTATGGCACAAAATATGTCAGTCTATTAAAAGGCCCCACCAGTTCTCGAGTTGGTCCCAACCCCATGAGTTGAGATAGAAGACCATCTTTGAGGACATCGGTTCGAACGTAGTTAACAAAACATGCTACATTTGAAAATGCTCTAGACTCTAATAATGCATACATTCTGAGGTAACAATACTTTGGAGTCAGTTGCTATAGTAGAGAATACAGTGGGGCACATTGACAGGTGGAGATAGAATGGCCACAGTCCATATTGATAGAGAAAGTTGAACTGAATCAATTATAAATGTAGGCCTTACTGTCCCATGACTAATCCATTTTCTCTTTCAACTGAAAGGTGATTTCAGTTCATGTTGCATGCCATTTACATTAGCCATAGTGTCAATACAAACCTTAATAAAGTGTTTCATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435400 lncRNA downstream 47002 32870950 ~ 32872918 (-) True G2129961
TU2435403 lncRNA downstream 84779 32830017 ~ 32835141 (-) True G2129964
TU2435544 lncRNA downstream 92973 32826132 ~ 32826947 (-) True G2130089
TU2435541 lncRNA downstream 94354 32824393 ~ 32825566 (-) False G2130088
TU2435622 lncRNA upstream 81219 33013379 ~ 33019915 (-) True G2130162
TU2435704 lncRNA upstream 173712 33105872 ~ 33107219 (-) True G2130229
TU2435711 lncRNA upstream 189006 33121166 ~ 33121566 (-) True G2130236
TU2435716 lncRNA upstream 199436 33131596 ~ 33131887 (-) True G2130241
TU2435740 lncRNA upstream 235766 33167926 ~ 33168125 (-) True G2130258
XM_021589960.2 mRNA downstream 306 32875439 ~ 32919614 (-) True LOC110509019
XM_036966231.1 mRNA downstream 107896 32805525 ~ 32812024 (-) True LOC110509015
XM_036966230.1 mRNA downstream 107910 32805525 ~ 32812010 (-) False LOC110509015
XM_036966232.1 mRNA downstream 107910 32805525 ~ 32812010 (-) False LOC110509015
XM_036966228.1 mRNA downstream 116243 32798109 ~ 32803677 (-) True LOC110509016
XM_021589963.2 mRNA upstream 12382 32944542 ~ 32948512 (-) True LOC110509023
NM_001165154.2 mRNA upstream 22790 32954950 ~ 32957306 (-) True rgs1
XM_021588655.2 mRNA upstream 30336 32962496 ~ 32964152 (-) True LOC110508225
NM_001124640.1 mRNA upstream 36789 32968949 ~ 32973868 (-) True rgs18
XM_036966337.1 mRNA upstream 217845 33150005 ~ 33153414 (-) True LOC118944830
TU2434271 other downstream 689706 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 754898 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 754898 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 754898 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 891362 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 466387 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1108046 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1109278 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1109409 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 1112530 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile