RNA id: NM_001165154.2


Basic Information

Item Value
RNA id NM_001165154.2
length 1538
RNA type mRNA
GC content 0.42
exon number 5
gene id rgs1
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32954950 ~ 32957306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATACACTTTGACAACTAACAGAGAACCACAACACTGAGTGCTACATACACAGAACCCAACTATTGTTCCCCCAAACATGCCTATCTCAGTCACGTCACCATCAAGGGAACTGCATTCACACAACATGGACATGGACGACAAGAGGAGAAATCAGACGAGGGGAAGCGACTTGAAATCCCGACTACAGCGCAGATCTTCCCAAACCCCCAACACTGAACGACTTAGCCCCGAGGAAATTATCCTGTGGTCCCAGTCTTTGGAGAGACTTCTCGCATCGAAATATGGCATGACAACATTTCAAGCCTTCCTGAAGTCGGAGTTCAGTGACGAGAACATTGAGTTCTGGCTGATCTGTCAAGACTACAAGAAGATCAAGTCGTCCTTCAGACTGTCCTCCAGGGCCAAGAAAATCTACAAGACATATATTGAAGCCGAGGCTCCAAAAGAGATCAACATTGACCACAAGACCAGAGATCTCATCAGGCGGAATGTGAAGACGCCCACCACAGTTTGCTTCGACGAGGCCCAGAGGATTGTGTACAGATTGATGGAGAAAGACTCCTACCCCAGGTTCCTCAGATCCAACATCTACAGGACCTTACTGGACTCTGCATCAGACTACATTAAGGTGTAAATGAATACCAACGGTAGAAACTGGACCGAGGCTTCCAACAATGGACCGCAATGTTAGACAGCCAAGAAGGGTTTGCAAATGGGATTCTTAAGAAGATGTTTCCAAATGTGAATTCTACTGGGTACAGAGATAACAGGCCAAAAGGAAACAGAACGTACAGAAGCGACTTTGAATCCTTATTGACATTTGTGTCTAGTAGTCTATGTGCTTCCACTTGAAAGATAAACACAACAGGGGCAGCAGcagctagtggttaagagcattgcgacagtaactgaaaagtcgctggtttgaatccctgagttgactaggtgatgtgcccttaagcaaggtgcttaaccctaattgctcctgtgagTCGCTCTGGGTAAGAGAGTCAGCTAAATTAATACAAATGTAAGTTAAACATATGATACATAGAAAAGGATTACATAGAACATAGAAATAGATTGTATTTCTATGACAGAGATGGGGTGCTGGGGGATTACCTGGCAGAGTATGTGATAGTTAGGGACTTTCTGTGTCTTGGGGGATGTTTTCAAGGATGCATATTATGTAGCATGTTAACAGCCAGAGCAGCAACTGCATGAGCAGGTATCTGCAGTTGATCAGTGGAGTTATTTGATGAGACATTAGATGGGATTATCTACTAAGTGTGTCTTTTAAAACCAATACAAGTTTAGAATAGGATATGTTTTTACTCTGACACCACGCCATGAGGCATGTAAGCTGAAAAACATTATAACATGTTGGAGAATTAATATGTGAAGGAatgacaatgtaaacatgttgttgttgcactgtatatatgtaaacATTTCCAACGTAATGAATGTATTTGTTTGCTAAATTAGGATATTACTGAATATAAATTCAAtaaaaacacatacatacattcacac

Function

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435400 lncRNA downstream 82032 32870950 ~ 32872918 (-) True G2129961
TU2435403 lncRNA downstream 119809 32830017 ~ 32835141 (-) True G2129964
TU2435544 lncRNA downstream 128003 32826132 ~ 32826947 (-) True G2130089
TU2435541 lncRNA downstream 129384 32824393 ~ 32825566 (-) False G2130088
TU2435622 lncRNA upstream 56073 33013379 ~ 33019915 (-) True G2130162
TU2435704 lncRNA upstream 148566 33105872 ~ 33107219 (-) True G2130229
TU2435711 lncRNA upstream 163860 33121166 ~ 33121566 (-) True G2130236
TU2435716 lncRNA upstream 174290 33131596 ~ 33131887 (-) True G2130241
TU2435740 lncRNA upstream 210620 33167926 ~ 33168125 (-) True G2130258
XM_021589963.2 mRNA downstream 6438 32944542 ~ 32948512 (-) True LOC110509023
XM_036966376.1 mRNA downstream 17780 32919920 ~ 32937170 (-) True ro60
XM_036966377.1 mRNA downstream 22790 32919920 ~ 32932160 (-) False ro60
XM_021589960.2 mRNA downstream 35336 32875439 ~ 32919614 (-) True LOC110509019
XM_036966231.1 mRNA downstream 142926 32805525 ~ 32812024 (-) True LOC110509015
XM_021588655.2 mRNA upstream 5190 32962496 ~ 32964152 (-) True LOC110508225
NM_001124640.1 mRNA upstream 11643 32968949 ~ 32973868 (-) True rgs18
XM_036966337.1 mRNA upstream 192699 33150005 ~ 33153414 (-) True LOC118944830
XM_036966876.1 mRNA upstream 321248 33278554 ~ 33307172 (-) False LOC110508227
XM_036966878.1 mRNA upstream 321248 33278554 ~ 33307172 (-) False LOC110508227
TU2434271 other downstream 724736 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 789928 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 789928 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 789928 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 926392 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 441241 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1082900 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1084132 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1084263 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 1087384 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile