RNA id: TU2434827


Basic Information

Item Value
RNA id TU2434827
length 811
RNA type TUCP
GC content 0.59
exon number 5
gene id LOC110509024
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33050612 ~ 33070407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTGCGCCGTCTCCACCACCTCCAGATCGCCTCCACCGCCATCAGGGTGACTGAAACCAGGACAGGCCCCCTTGGATGCAGTAACTATGATAACCTTGACTCTGTCAGCTCAGTACTGGTCCACAGTCCAGAAAACAAGATCCAATTACAAGGACTCCAGGTCATTCTGCCAGCGTACCTGCGGAGCCGCTTCGTCCAGGCAGCCCTCAGCTACATCGGCTGCAACTCGGAGGGCCAGTTTGTGTGCAGGGCCAGTGACTGCTGGTGCCAGTGTAGCCCGGACTTCCCACAGTGCAACTGTCCACAGACGGACCTCCAGGCCCTGGAGAACAACCTGCTCCGCCTCAGAGATGCCTGGACACTGGCCAACGAGGAGTTTGAGGAATCAGAGGAGTTCCAAAGCTTCGTCGGAAGGCTGCCAACCCAGTACGCGGTGAACAAATCTGTCGTGGAACACTTTTGGAGGACGGATGGGGGTCTTCTCCAGCGCTACAGGCAGCTGGAGACCATGAGAGGCCTGCTTCTCGACAAAGCGCGCCACACCGCTAACAAGCTCTTCAGCCTCATTAAGAGATGCCGCCATCAACCCAGAATTGTGCTGCACAGGGAGAGaCCCCTTCGCTACTGGCTGAGCTACATCCTGTCCCTCCTGTACTGCAGTGAGAACGACCACATCGGCGTGTACTCTGAGCAGACCAGGAGCTGTTCCTGCCCCTACCACCACTCTTCCTGCCAGGGCCCCGTCCCCTGCTCTGTGGGAGAAGGCCCCCGCTGTGCGTCTTGTTCCCCCGAGAACCGCACCCGCTGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2434764 lncRNA upstream 100920 32954952 ~ 32957377 (+) False G2129429
TU2434765 lncRNA upstream 100920 32954952 ~ 32957377 (+) True G2129429
TU2434734 lncRNA upstream 110379 32895331 ~ 32947918 (+) True G2129401
TU2434611 lncRNA upstream 112623 32869908 ~ 32945674 (+) True G2129288
TU2434744 lncRNA upstream 127674 32930072 ~ 32930623 (+) True G2129411
TU2434864 lncRNA downstream 21981 33091151 ~ 33092647 (+) True G2129522
TU2434873 lncRNA downstream 36806 33105976 ~ 33106435 (+) True G2129530
TU2434899 lncRNA downstream 85388 33154558 ~ 33154799 (+) True G2129552
TU2434906 lncRNA downstream 96948 33166118 ~ 33166591 (+) False G2129559
TU2434909 lncRNA downstream 97037 33166207 ~ 33166591 (+) True G2129559
XM_036966379.1 mRNA upstream 146365 32903594 ~ 32911932 (+) False LOC110509022
XM_021589962.2 mRNA upstream 146365 32903609 ~ 32911932 (+) False LOC110509022
XM_036966380.1 mRNA upstream 147064 32872931 ~ 32911233 (+) False LOC110509022
XM_036966336.1 mRNA upstream 221859 32814704 ~ 32836438 (+) False LOC110508224
XM_036966298.1 mRNA upstream 274008 32759166 ~ 32784289 (+) False zbtb41
XM_036966929.1 mRNA downstream 55302 33124472 ~ 33126977 (+) False LOC110509025
XR_005040280.1 mRNA downstream 55302 33124472 ~ 33126977 (+) True LOC110509025
XM_021589967.2 mRNA downstream 87471 33156641 ~ 33165714 (+) True LOC110509026
XM_036966835.1 mRNA downstream 107582 33176752 ~ 33212483 (+) False LOC110508226
XM_036966704.1 mRNA downstream 162352 33231522 ~ 33247262 (+) False LOC118944857
TU2434604 other upstream 254375 32783868 ~ 32803922 (+) False zbtb41
TU2434606 other upstream 254375 32784971 ~ 32803922 (+) True zbtb41
TU2434698 other upstream 308729 32748928 ~ 32749568 (+) True G2129371
TU2434599 other upstream 357453 32631289 ~ 32700844 (+) False pfn2l
TU2434597 other upstream 357453 32673803 ~ 32700844 (+) True pfn2l
TU2434998 other downstream 238928 33308098 ~ 33308991 (+) True G2129639
TU2435087 other downstream 362581 33431751 ~ 33432107 (+) True G2129708
TU2435103 other downstream 383042 33452212 ~ 33452873 (+) True G2129724
TU2435171 other downstream 502938 33572108 ~ 33575970 (+) False G2129765
TU2435288 other downstream 659978 33729148 ~ 33729528 (+) True G2129859

Expression Profile