RNA id: TCONS_00058124


Basic Information

Item Value
RNA id TCONS_00058124
length 408
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id XLOC_028593
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12288765 ~ 12297450 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGAGTGTTTGCCACTGCAGATGTTTTCTCAAGCTGTCACAAACCATGTCTGGTTGCAGATCCATCGAGACAAAGGCATGCAGTGAGCAGCCGGATTGTGCAGGATGTCTGGGTTTATATTCCTGTAATCTTGCCGTTGGAAAGTGCCAGCTGAAAGGACTCTCTCGAAAATCAGGGGGATTCCACCAAAGTTTAAAAGATGTCTGAGCACCggaaatatgtttaaaatgctGTTTCTTAATTCCTTTCATAATAGAAACAAACGTGGATGACTGCTTGTTAGAAAAACATATTTCTTGTACATTTTTGTGACTCcctttatgtttcttttttctggatATTTCTGGTATTTAATTTGTGCATTAACATTTCAATAAATTTAGCCAAGCAGTTTTAGtgctttttat

Function

GO:

id name namespace
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0097458 obsolete neuron part cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057331 lncRNA downstream 47192 12240134 ~ 12241573 (-) True XLOC_028591
TCONS_00058121 lncRNA downstream 49954 12230026 ~ 12238811 (-) True XLOC_028590
TCONS_00058120 lncRNA downstream 63940 12221159 ~ 12224825 (-) True XLOC_028589
TCONS_00055455 lncRNA downstream 63955 12217519 ~ 12224810 (-) False XLOC_028589
TCONS_00055454 lncRNA downstream 63969 12170039 ~ 12224796 (-) False XLOC_028589
TCONS_00055459 lncRNA upstream 24368 12321818 ~ 12323159 (-) True XLOC_028594
TCONS_00055467 lncRNA upstream 418472 12715922 ~ 12717752 (-) False XLOC_028598
TCONS_00057332 lncRNA upstream 443912 12741362 ~ 12742600 (-) False XLOC_028600
TCONS_00058125 lncRNA upstream 443951 12741401 ~ 12744353 (-) True XLOC_028600
TCONS_00055482 lncRNA upstream 496285 12793735 ~ 12794182 (-) True XLOC_028603
TCONS_00055456 mRNA downstream 2698 12243698 ~ 12286067 (-) False XLOC_028592
TCONS_00055451 mRNA downstream 182726 12102267 ~ 12106039 (-) False XLOC_028588
TCONS_00055452 mRNA downstream 184344 12103832 ~ 12104421 (-) True XLOC_028588
TCONS_00055449 mRNA downstream 186729 12075040 ~ 12102036 (-) False XLOC_028587
TCONS_00055448 mRNA downstream 186740 12074776 ~ 12102025 (-) False XLOC_028587
TCONS_00055458 mRNA upstream 20011 12317461 ~ 12323228 (-) False XLOC_028594
TCONS_00055460 mRNA upstream 84285 12381735 ~ 12388535 (-) True XLOC_028595
TCONS_00055461 mRNA upstream 103696 12401146 ~ 12477278 (-) False XLOC_028596
TCONS_00055462 mRNA upstream 115245 12412695 ~ 12477278 (-) False XLOC_028596
TCONS_00055463 mRNA upstream 115755 12413205 ~ 12477224 (-) False XLOC_028596
TCONS_00055457 other downstream 2699 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055433 other downstream 680482 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 681910 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055389 other downstream 1627088 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 3700857 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055464 other upstream 115969 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 298230 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055473 other upstream 480259 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 609531 12906981 ~ 12914170 (-) True XLOC_028606
TCONS_00055495 other upstream 677766 12975216 ~ 12978899 (-) True XLOC_028608

Expression Profile

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