RNA id: XM_036966878.1


Basic Information

Item Value
RNA id XM_036966878.1
length 5514
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC110508227
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33278554 ~ 33307293 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAAAGTCCAATAAATATTCGGGAAAATAAGAATGTTTTTAGGTTTATAGAGTTGATTCTGTCGGGTGCACAGGCCCCAAATGAGAAGCGATAAATATGTACTAAAATACGGAGAAGcgatatacattttaaaatattaaACTTGTCTCATTTCCATAAATTCTATTTTGCAAACTTCAGTTTTAGCGATGATGCCTGGCTAGTTAGCGCGATGGCTATGCTAAGTTAGCTACGTAGCTATTGTTGGGAAAGCTTGGCTGACTACGAGCGTTAACGTTACTCACTCGAAAAGGATCAAAGTTCATATTCTCGAATGCTATTGCATCTGTTGTTGTTGACCTGGTGGCATTCTGCGTACTGAAAGCGACACTATGTAGCTAAGTCATTATGTGATTAGTTAACTGAGGCAGTGGGTTAGCAAATAGCTATCTATCATTCAAAGTGTCCACATTGTGAGAGAACAATCCATTTTGATTATCGCTCACTTGAAATGTCTGATTTGACTTGTTTCAATGCTGGCCTGATCATCAGAGGTCTCCTTGTTTACAACCACCAAAAAAACTACTGTCACTGATATAAATGTTTACGTCGGCGTTAGCCAACGAGGAGCCAGTACCCTCCGTTGGGAGTACGAGCCCAGGAGGTTCAGCAGAGGACCATGAGTTTGATCTTTCAGCAGATATGCTCGTCCACGACTTTGACGACGAACGCAcactggaagaggaggagaggctcGAGGGAGAGACCAACTTTAGCAATGAGATCGACGACCTTGCCCGGGAGGGAGAGATGCCCATTCATGAGTTGTTGAGTATGTACGGATGTGGCGGCGGCTCACCTGCAGAtggagaggatgaagaagaggaggaggaagactttgaggatgaagaggagttggaggatgaggaagaggaggaagaggaggatgtggacAATGATGAAAGCAGTAGAAACATTGGCGAGCTGAAGAGGAATAAGaccgAGAGGGTGAAGATCTCGTCAGGAATGGGGAACGAGAACCTGTTGTCCAGCGAGGGTCGCACGCGCTCCGTCAAATCCCACGGCACGGCAGAGCTGATACGCGGATCACAGACCCTCAAGTACTTCGAAAATAAGGATGCAGAGGAAGAGTCGGAAGAAGATGAAAATTATGTCCCTTCTGAGGATTGGAAAAAGGAAATCATGGTTGGGTCCATGTATCAGGCTGAAACACCGCCTGGCCTTTGTAAATATAAAGACTATGAGAAAGtaTATGAAAACGATGACCAGCTTTTATGGGACCCCGAGTTCCTTCCCGAGGGCAAGGTTGTGGAGTTTTTATCTCAGGCGTCAAAAcgaacaggagaggagaaaggagtggATGCCATCCCTGAGGGATCCCATATCAAAGACAATGAGCAGGCACTTTATGAGTTGGTCAGGTGTGAATTTGACACAGAGGAAGCTTTAAGAAGACTGAAGTTTAATGTGAAGGCAGCTAGAGAGCTGTCTGTGTGGACAGAAGACGAATGTAGATATTTTGAGCAAGGACTAAAAGGTTATGGGAAAGACTTTCATTCAATACAAGCCAACAAGGTGAGAACTAGGTCAGTAGGAGAATGTGTGGCCTTTTATTACATGTGGAAGAAGTCTGAGCGTTATGATTTCTTTGCACAGCAAACCAGGCTGGGGAAAAGGAAATACAGCCTTCACCCTGGGGTCACGGACTACATGGACCGGCTGCTGGACGAGACGGAGAGCGCCACGTCCAGCCGGGCGGCCtcgccccctcccaccacctccaaCAGCAGCACCAGCCACTCTGAGAGGGAGGACGGCAGTAGCAGCCACAATGGTTTAGTGAGTCACAACTTGGGCTCGGGAGAAGCTTCCCAGTCATCCACGGTGGCGAACGAAGTCAAAGCAGAATCCGTCCAGTTCAACGGGCtcacctccccccacccctctctggaTGTTCTCCCTcctgccccccacccctctctggaTGTTCTCCCTcctgccccccacccctctctggatgttctccctccttcccctgccccccacccctctctggaTGTTCTCCCTCCTTCCActgccctccacccctctctggaTGTTCTCCCTCCTTCCActgccccccacccctctctggatgttctccctcctcccactgccccccacccctctctggatgttctccctcctcccactgccccccacccctctctggaTGTTCTGCCTCCTCCCActgccccccacccctctctggaTGTTCTCCCTCATCCCACTGCCCCCCACCCGTCTCTGGATGTTCTCCCTcctgccccccacccctctctggatgttctccctcctcccactgccccccacccctctctggaTGTTCTCCCTCCTGCCCCCCACCCGTCTCTGGATGTTCTCCCTcctgccccccacccctctctggacgctctccctcctgccccccacccctctctggaggctctccctcctgccccccacccctctctggaggctctccctcctgccccccacccctctctggaGGCTCTCCCTCCTGCCCCCCACCCGTCTCTGGacgctctccctcctcccaccaCCTCGGACAATGAGTCCAGTGGCTGCGAGGCAGTGGCCGCCACTCCCAGCCACAACAGGAACGGCTCCCTGGAGCCCCATTGTGGCAACAGTCACTACGATGACAGGCCGGCCAAGAGGTGCCGGACAGAAGCGGAGCCACCAGAACCCTCCAGAACATTGACGACCCTCCAGCAAGAGGACAAATGATAATGATGACCCCTTCTCAGAGAGGTCAAAGCGCACAGAACCAAACCTAaaaaaaataacatggttgtattcattagtgcacaccgcagcaaaacgttttgcaacagaaaaataAAACTAgattttcttattggacaagttcaggtagtccatCCCTGTtggtctgtttttttttctcgttTCGGGCCTAGTGAATACGACCTATACCAACCAACCAAACACGGCTGGGCCACACCAGCAAACGGAGGGAAGGCAGCGGCCTGATTGTAAAGGGGCACAACATACAGCCCTGCCTCATCCCCCATCCAGCAAAACCTCGTCCCCCATCCAGCATAACCTCCAACACTCCACACATCCAAAGTACCACAGTTCCTgaaccccctcccttccccctacCTGCTACCACCTCATTATAATTCATGCTGATTCTTCTACTTATTCTCCTTATTCACTTTTTTGGAGACCGATCTCGAAGATTTCTACGGAAAGAAAATGTTTTTTCCCCTATTTGTATTAGAATTTAAAAAATCTCCTGTGGTATTTTTTTACttgaaaaatatgtatatattttttcaataaaTGTACTATTATTGATGGGTATTTTGCTTTCCAAGCCATTTGAAACAAAGACATGAAAGGGGCGATGTTGAGGGTCTCGGTCTTCGACGGGACGATCGATATGCAGGCAGACTGGCGCTGTTGCAGGCACACTAAAGCCTCGTTTTTACCTGGCGCTAACATACATTCTTTattctgatcttgtccacattctgattgtggcTAGATTTTCAGATATGCATCTACACATAGTATTAAAATGGGATAATAATTTAAACGTTTTCACTGTCCAGATCTGTCTACACTTTAAGATATCCAAACACAATGGGTGCCTGACTCTCTCCggaggtggtcaggaagatctGTTCACAATCTGTCTTTTAATCATCTACAGCTGTCCAAAAAATGttggcacaatcagaatgtggacaagatcacagcataccaccctgcatcccactgctggcttacctctgaagctaagcagtgttggtcctggttgggagaccagatgctgctggaagtggtgttggagggcactctttcctctggtctaaaatataCCAACGCCCCAggacagtgattggggacattgccctgtgaagggtgcagtctttcggatgggacgttaaacgggtgtcctgtcTGTGGTCACTGAAGATCCCATGCCACTTATCGTAAAAGTAGGGGTGtcaaccctggtgtcctggctaaattcccaatcagACCcacataccatcatggccacctaatcaccCCCAGCTTCCAATAGGCTCATttgtcccccctctcccctgtaactattccccagatcgttgctgtaaatgagaatgtgttcagtcaacttacctggtaaaataagggttaaaatcAAAAATCCGGACAAAGGACTGATTGTGATCTGAGAAGCAGGTATAAACGGGGCTTATGTTGCACTTTCACcctttgtttttctttctttggTGATCGAGTGGAGAGAAAGCAACACTGCTGCATGACATCATTGCTTATTTGAAACCTGTGGTGTGTTCAGTTCGATTGAAGTTTGCTATGTTGCGTAACGGTTTGTACTGAACGACACGTTTCCCCAAAAACATTCCAATGTTCTTTGAATGGACTTTTGAGGTACGTTTGCTCCGTTTGGCgggtgtggcttgaagcaatgGGGGGACATATTTAACGAGCAGCGGCCATGCTGATCCCCAACCTCTCttggttttttttttttgagctGGCCGTTCAGAACAGCACCGTTTCTGTTTAATTGAATGTTGCACTGCTTTTTTTTTTCCGTACTGAACGTAGCCCTGACCATGGAAACATTTTAATTGCAAGAAATGAACTAATGGGGAGTGTCTGTCCCTGAGGTTTGTGTAAAGTGTCTGACATCAGTGATGTCTTGTATTATATATAACTCATTGGTTAGAACGCTGTATTTTTAATAGCCAGCGTTTTCCTATTGTTTCGTTTCTCTTCTTTTTGCTAGACAGTACTTCTGTGACTTTGTGTAAAGTTTGTAAAGATTTTTCTTGTTCACTTCTTACACTTTTTTGATAAGTCTCTTTAATCTGTGTATTTTACCATCTTTCTTGTGAGCTTTTGTTAAAGGATTTATTTCCTCTAGGTGTTCCCGAGTGGAGCTGTTCTGAAAGTAGTCCTATTTCTCTGCATTTCCCTGACCCATTTGGAAATGTATTTTCAGCAAAAAATATGTTTGATTACTTGATACTGATTCCATCTAAAAGAGAGACGCGGTGTAGTGACACTTGGTCTTTTAGGTTGAAAGctcttttttcaaaatttggaGACAATGTGGTACCAGTAACGTTTCTTGGCACCCGCGAGCTCTCATTATTAGGAATGAAAGAACTTGACTGTAAGCTTCAATGTGAAGAACCTTCATTAGTTCCAGTGGAGGCTTTTTGACAATTGTGTTACTttatcttttttcttttttttctcaatGTCTCAACGTTTTACTCTTTTTGTAAGCTACTCCTGCTTTGGTCTACATTCACAAATGgtttgtaaaacaaaaaaaagcattttttttttttttttgttctttaaAAGCACAGCCTCAAATAATGTTGATTTCAagtagtttatttttattattttattatctGCTGTAAGTAGTCATCTGAAAATGACAACATTTAATAAAAGTGAAGCGTATACCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435745 lncRNA downstream 3799 33272894 ~ 33274755 (-) True G2130263
TU2435746 lncRNA downstream 11359 33261645 ~ 33267195 (-) True G2130264
TU2435769 lncRNA downstream 22578 33227158 ~ 33255976 (-) True G2130286
TU2435877 lncRNA upstream 76633 33383805 ~ 33384077 (-) True G2130382
TU2435879 lncRNA upstream 80356 33387528 ~ 33387751 (-) True G2130384
TU2435880 lncRNA upstream 80860 33388032 ~ 33388359 (-) True G2130385
TU2435882 lncRNA upstream 82860 33390032 ~ 33390255 (-) True G2130387
TU2435889 lncRNA upstream 92563 33399735 ~ 33400010 (-) True G2130394
XM_036966337.1 mRNA downstream 125140 33150005 ~ 33153414 (-) True LOC118944830
NM_001124640.1 mRNA downstream 304686 32968949 ~ 32973868 (-) True rgs18
XM_021588655.2 mRNA downstream 314402 32962496 ~ 32964152 (-) True LOC110508225
NM_001165154.2 mRNA downstream 321248 32954950 ~ 32957306 (-) True rgs1
XM_021589963.2 mRNA downstream 330042 32944542 ~ 32948512 (-) True LOC110509023
XM_021589972.2 mRNA upstream 2831 33310003 ~ 33313291 (-) True dynlt5
XM_036966873.1 mRNA upstream 6261 33313433 ~ 33380665 (-) False LOC110509030
XM_036966874.1 mRNA upstream 6261 33313433 ~ 33380665 (-) False LOC110509030
XM_036966875.1 mRNA upstream 6261 33313433 ~ 33380665 (-) False LOC110509030
XM_036966872.1 mRNA upstream 6261 33313433 ~ 33380666 (-) False LOC110509030
TU2434271 other downstream 1048340 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1113532 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 1113532 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 1113532 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 1249996 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 91375 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 733034 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 734266 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 734397 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 737518 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile