RNA id: XM_021589972.2


Basic Information

Item Value
RNA id XM_021589972.2
length 815
RNA type mRNA
GC content 0.47
exon number 5
gene id dynlt5
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33310003 ~ 33313291 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGAGTCCTTTTAAAAACCCGATGAATGCAGTTGGTGCAGGATAGGAAACCCCTCCTCCAAAACGGACGGTTGTCAGGACAACACAATGCGCTGGATCGCTACAATGTTTCTGCTTTGACTCGTGAATTCTGAATAGCTAGACAACAGGCAGAGTAATGTCTGATTTAGCTAAAGAAAAGGCAGCTCGTCTTCTGAAGAAGAGAGGTAGTGTGTCATCCCTTGGCAGCCATGATGTCAGAGCCAAGGAAACAGGGGGCAAGATCAAGGATTCTATAAGCACCGTATCCTATATCGATGAGCCTGGTCACCATGACGATAACCCTCGACCCGCAGTACAGATGGAGAACACCTTCCAATTGGCACCACTTAGACGCTTCCCTGTTCTCACGGTCAATGACATCCTGAAGGATGTGCTCGACAGTTACCTGCAAGAAGAGAAGTATGAAGCTGAGCTCTGTCGGCAGATGACAAAGACCATATCCGAGGTGATCAAAGCCAGGGTGAAGGATCTGATGGTTCCCCGTTATAAGATCATTGTTCTGATCAGCATCGGACAGCTCAGTGACCAGAACATGCGCATCGGGAGCCGCTGCCTGTGGGACTCCTCCAACGATACCTTCTCCTCACACTCCTTCAAGAACAGCTCTCTCTTCGCCGTGGCCAACGTCTACGCTGTTTACTTTGAGTGAGTCATCACCCATGGTCACAGATCACTGTCTTGGACTGTAGGTAATCAAGTCCTATATAGTCTTATGTAGTCTGTCATAAGGGCTACATAACAGTGTTATAAGCATGACATAATAgatttgattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435745 lncRNA downstream 35248 33272894 ~ 33274755 (-) True G2130263
TU2435746 lncRNA downstream 42808 33261645 ~ 33267195 (-) True G2130264
TU2435769 lncRNA downstream 54027 33227158 ~ 33255976 (-) True G2130286
TU2435877 lncRNA upstream 70514 33383805 ~ 33384077 (-) True G2130382
TU2435879 lncRNA upstream 74237 33387528 ~ 33387751 (-) True G2130384
TU2435880 lncRNA upstream 74741 33388032 ~ 33388359 (-) True G2130385
TU2435882 lncRNA upstream 76741 33390032 ~ 33390255 (-) True G2130387
TU2435889 lncRNA upstream 86444 33399735 ~ 33400010 (-) True G2130394
XM_036966879.1 mRNA downstream 2710 33278554 ~ 33307293 (-) True LOC110508227
XM_036966876.1 mRNA downstream 2831 33278554 ~ 33307172 (-) False LOC110508227
XM_036966878.1 mRNA downstream 2831 33278554 ~ 33307172 (-) False LOC110508227
XM_036966880.1 mRNA downstream 2831 33278554 ~ 33307172 (-) False LOC110508227
XM_036966881.1 mRNA downstream 2831 33278554 ~ 33307172 (-) False LOC110508227
XM_036966873.1 mRNA upstream 142 33313433 ~ 33380665 (-) False LOC110509030
XM_036966874.1 mRNA upstream 142 33313433 ~ 33380665 (-) False LOC110509030
XM_036966875.1 mRNA upstream 142 33313433 ~ 33380665 (-) False LOC110509030
XM_036966872.1 mRNA upstream 142 33313433 ~ 33380666 (-) False LOC110509030
XM_036966871.1 mRNA upstream 142 33313433 ~ 33381200 (-) True LOC110509030
TU2434271 other downstream 1079789 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1144981 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 1144981 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 1144981 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 1281445 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 85256 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 726915 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 728147 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 728278 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 731399 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile