RNA id: XM_036966871.1


Basic Information

Item Value
RNA id XM_036966871.1
length 6251
RNA type mRNA
GC content 0.48
exon number 27
gene id LOC110509030
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33313433 ~ 33381200 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTCTGCTAACGGACCAATCTGTGtgcacagagtttctaaacccagatgCGCAACTTCACGAAACTTCCGGGATCCCGTGCGAAACGAACCAGGCCAGGTTTTGACAAGTCAATGGGAGAACAATTATTCcttagttgttcattttcttgAAATCTAGATGCACGACCTAGATTCGAACCAATATCTTATGTTGTGGAACacgttattactccaacctcgtgaaagtgacaaactgacaagGTTTTCAATTTAATATCGAAGGAGTGCCTTTCTGCACATGCGCAGGTCGGCGCCAGACGACTGTTAGACCCGATGACGTATTTATAAGCATGAGCTTAGCAAGCCAAagtcgccatgacatcgcctagaagtgtgatcggggatttctattggagaagcagttttagcCTACCTTCATACTGTACATTATTTGGTAAGGCTAAGGCATCAGGGTACAGAAGCGATAGGACAAAGCAGATGATTACTGGAGTGCCGGGATTGGCTCTGCTCAGCATCCACTTCTGATGCCGTGTGTCTGTGCTGTTGGGGCGACCGGAGCCTAACGCGCAGGGCCCTTCACCCGATTAACTGCACCTTCCCTGGGTTTCTGTCTCTTCCACTTCCCCCTGCCTGTCAGCCTGCTTGGATACCTCCCCCACCCCCCGTAGGGAGAAACGACAGTCTGCTTCACTGGGGAGCCGTTCGGGAATTAGCAATGCCCAATCCCGGCATCCTTTAGCCACTTGGAATATCTCGGATTTCTACATCCGTCCGTCTGTCTCGCTATCCATCTGTCGCCGGTCTCCCTCCATCCGTGGCGGGGGACAGAGGAATGAACATCTGCAGCTATGATACAAGGACTGAAGAAACGCACCCGGAAGGCCTTTGGGTTAcgaaagaaagagaaggacacagacTCCACGGGCTCCCCTGACAAAGATGGAAAAAAGACCAACGGGGCTCCAAATGGCTATTATGGGGAGATTGATTTGGACCGATATGCCGCTCCAGATGTGGACGCTGATGGCTTCAGTCTCAGAcccggagaggagagagagaCAGCTCCCAAAGGCAAGCAGCACTTCTCCTCCAGCGACACTGAGGATGAGGACGACAACAGAAAGTTCAAGATTAAGATCAAGCCGTTGCCCTCCGACACTGCCAAGTGTGCCATCCCCTCCATGGATGAACTGAAAGCTTCTGTTGGAGGTTtggctctgtctccctctttgAGGAGAAGTCCGAGACGCAGCCCGGGCTCAATAAAGAGACACCTGTCTTGTGAGGAGATCGCCAGACCCAGACGCTCCACCCCTACACCAAGCCCCGCCCCCGAGACACAAAGTGAGAGAGTATCCCAGAATCGCAGAGCATCCCCAGCTTTCTTCGGGCCTCCTCCTGAGACGACCTATGAGACACACAGATACGATAGTAACAGAAACGATGGTGAGGAGATCGCCAGACCCAGACGCTCCACCCCTACACCAAGACCTGCCCCCGAGACACAAAGTGAGAGAGTATCCCAGAATCGCAGAGCATCCCCAGCTTTCTTCGGGCCTTCTCATGAGACGACCTATGAGACACACAGATACGATAGTAACAGAAATGATGTAGTCTGTATAGAGGCTGATGCATGGTGTGACTCCAGACCAGACTCTGACTCCCCTTTGACCAGAAACTTTCCCACAGGAGctcctcctccacttcctcccaaGAACATCCAAGCAGCTAGTCAAGGCTATTCTTCGTCTGATTCTTCCGTTGATTTACACAATGGGAGAATAGTCTCAAGCCCCGCCCCCATCTACCTGAACGTCCAATCCCCAGCCTCATACAGAGGTTCCCCCGTAACTGACCTGGAAGATGTGTTCGGCCCCATGGAATCCTGCCGGATCAATGAGGGCAGGGCCTCGCCCCGATGGGTCAGCTTCAACAGTGAGAGACCACCCCCACCAGAAGAACCGGCCCCGCCTCCGCCCCCTGCCTATCCTCCTCCTGACTCGCCCaactccctctcttccaccccagactccccctgcctctccccggGCCCTCCTCCGGATGAGCCTCCCCCCTCCCCGCCGCCCTTTTCCTCTCCCCCCGACTCGCCCATCTCCATCATCTCCATTCCCCCTCCAAATGAACCCGTTCCCCCCCTGCCTCCAGACTTCTTGCCCCCAGACTCCCCACCGTGCATCGCCATCAATCCTAGTCTGTTTTTGGATGATGATGAGATACTGGAGTACTCCCATGCTCCCTATACCCCTGCTGCCCCACTGGAATACTCCCCTGCCCCTACCAGTCCCATCCCTCCCCCCCTGCCTGCGGAGCGCTCCCTTCGGGCAGGCATCCCTTCCCCTCTGGTGTTCCTTAGGGAGGAGCAGCCTGACTTTATGTCCTGGCCCCTGGTGCTGACCCCGGGCTTCAGGGGCGTGCCGTCCCCCCTCCTCCCACCCGCCTACAGGCCCATGGTGTCTTCCCCCGGACCCTGCCCAGGCAGTGgcccctcctctccacctcgcCCTGCCACGCCCCTGTCAGGAGGTAGTCcagtccctccccctcttcctacAAGGCCCTCCTCTCGACCCAAACTGCCCCCTGGGAAACCAATGGGAGACCTGgcTCGGCCCTTCAGCCCCCCAGTCTCCGGCAGCCCCCCTCCCTTCGCCCCCCTGGCCCGAGCCGAGAGTTCCTCCTCCATCACCTTGCTGAGCGCAGCCTCCACCCCCACCCTGGGGAGAGAGCTCAACATATCCACTACAGgatgctCCAGAGGACCCAGCCCACTGACCATGGGAGCCCAGGACACTCTGCCCGTGGCGGCTGCCTTCACTGAGACCATCAACGCCTACTTCAAAGGAGCCGACCCCAGCAACCGGCAAAGCGACCCTCATCAGAATAAATGCAACAAGTGTGTGGTGAAGATCACTGGGGAGATGGTGCTGTCTTTCCCAGCAGGCATCACCAGGCACTTTGCCAGCCATCCGTCTGCCCCTGTGCTCACCTTCAGCATCAGTAACTACTGTCGGCTAGAGCAGGTCCTCCCCAATCCACACCTGCTGTGCTGTGACACCACCATGTccaatgtggacaccaaggagttCTGGGTAAATATGCCAAACCTGATGAGTCATCTGAGGAGAGTGGCTGACCAGAAGCCTCAAGCAACCTACTACAATGTGGACATGATCAAATATCAGgtAGCAGCTGAGGGGATCCAGTCTACTCCCCTGAACCTGGCGCTGAGTTGGCGTGGCGACACCACCAGCACGGACCTCAGAATAGACTACAAATACAACATGGAGGCCATGGCCGcagccccctcccccctccacaaCATCCACTTCCTGGTCCCTGTGGACGGGGGCGTGGCCAAACTCCAAGCCATGATCCCCACTGCCACCTGGAACCCAGAACAGCAGAACATTCTATGGAAGATATCAAGCCTTTCCCAAAGGTCTGAAAATGGAGGAGTGGGGGCTCTACTGGGTAGGTTCCAGTTGACAGAGGGTCCCAGTAAGCCGTCCCAGTTGGCGGTGCAGTTCACCAGCGAGGGCAGCACTCTGTCAGGCTGTGACATCCAGCTGGTGGGGACTGGCTACAGGCTCTCGCTGGTCAAAAAGAGATTTGCAGCagGGAAATATCTAGCGGACAACTAGTCACCACTGTTGTAAAATGGAACCCTTTCAACCATACGATGGCTTTTGACTGTGAGGATGATGAGAGACTTTTTATGGATTCTTCATTCGATACAAGTTACCAACTGAGAAACGTCTGAAACCTAACGCTTGAGCAGTGAGGGGTAACTGATGACATAGCAGCAACAACAGGATGTGATGTAATACGCACCGTCCACCAGGGTTCACCAGGGTATTGCTTTATGTTTTAATACACTCAAATACAGTAGTCGCACTGTTGGAGTTTATGCAAGTAGTCACCCTTTTTTCTTCTCGTTTTGTGCACCTTGAGGGTTGATGAGGTCAATTGTAAaatcttttgtctgtaatgtttccgttatgtgtcggaccccagtaagactagctgtcaccattggcGTCGGCTATTGGGCATCCTAATCAATAAAACGTTTAGAAATCATAATGAAAGATAATGGATTCGACACATTTACTCCAGTTTAGCAAAGTCAATTATCATTGGCAGCACATACAATAATCCAGCCTTATCTGTGAGAAGAATTCTATGTGAATGGGTGATGGATGGAAGATGCACTGGACAGATTTATGTGAATAGATAGACACTGTTGTCATTCATTGATAATTCAATTGATTATGACAAGAACAATTGATTATGACAAGAACAATTGATTATGACAAGAACAATTGATTATGACATAACAATTGATTATGACCAGAACTCCACGTGCAGGGTTAGGATGACattttgatgtttttcttttattTATTGGGTTGATTCAACTGATATGGTACCAGCTTGTACTGCACCAGCACGTTGAGGCCCACAACTTGGAGTTAACGTACAGACAGCGTTATTATGTATGTGGTGGTTGTGTGTTTTGCTGGGAGGTCAAGTGGttcatgtaatgtaatgtaatggttCATATTGTTTTCCTGATTTGTGGATGACAAAAACAAAGCAGATGACCTTACAGGTTGAATAGCAGAGTTGCCTTGGACCAGATTACATTTATTTCTGAATTCTGTTTGTCCCTTAGAGTTGTTGTGTCCAGGAGTCCTAATCAAGAAtaactggttgaaatgacatcattACAACTGGTTAGGGTGGCAGGTGgcttagcggttaagagtgttgggccagtaactgaaaggtcactgttTTGAATCCCAAGTCAACTAGGTGGAAAATCTgcagatgtgcccttgagcaaggcacttaaccctaattgctcctgtaaagtcgctctggataagagggtctgataaatgactaaaatgtaaatgctaGAATTACATCAATTACTGGTTAGAAGTAGGTCTTTATGAGGtaatttcaaccagttttgcccgCTGGGAAGTATAACTGGGGGACATCAAAGAAGATGGAAAAGTGCTTCAAGAATGATTTATCTAAAATAGAATAACAATGAATATTCAACGGAATCCCCTAATGTTATGTTTCTTGTTTTTCCACCATGTGGAGTTAATAGTTGTTTTTGTCATTTTCTAATTGCAGTATATTGAAAATCTATTTGTAAAAAAAAGTGTAAATATGAAAGAAGCTTCTTCATATATCCCTTTGGATATATGGGTGATTCTGTGTTTGTCAAATCAGATATATGTTATATGGTTGGTGATAGCCtttacaatacattacagaacactgttttgttttgttttatttctaACGCGGATTTCTTGTAATATACTGACTGTCCCAATCTGCGTTACTcaactgtttgttttttttaaacctttttttaCTCTACAATGCTAGttcatttatttcaagacatttagGATGTCCAGCAGCACACAAgagtcccccctcccctcctaatCCAATGCTATTCTGACCTAGACTGGGTAAAGAAAACAGTAGTGAGTGTAGCGTTCAGTCTAATGTAACCAGGTTCATTCAGACCTACGTCTGTTATAGTACGTGTACTATGTGATTGTTTTTACTGTAACTTCTAGTCATGTCATTGTGTTTGACCTTTCACCTGAAGATTTAACCTTTAAACCTTTGACCTTTGGCATGAATCCACAACAACATTATCAAACTTCCACGATACTATTGCAAGTAACGTCCTCCTAGGTTTCCTCCCGACTTGCACACCAACAACAAATACATTTGTGTAACTGTAATTGTTTTGCTCCTGCCCATCTCAAGGAGAAATAATGTTAGTGTATTATTTTCACTTTATGACAATTGGTAATAGAATTACCTCACGTTATTGTTACTTATTTCCAAATCAGTATATTCAAAATGAGTCGCGACCAATGACAAAAGAGCCTTTTTAATCCTTGATATTATCAATAACTATGGTAAATGTATTTCAACTTTTAGTTTTTTTGTCCTGGTTGCaatatttaatttatttgttTGAGCCTTACTGGCCCTTTAAAAAGTATTCACAAATAAACGTTTTTTCTGTCAGTATTTTATTCACTGCATAGGACACTGAATATGCAAACATACCATGTACATTTCCCATCCAAAGATTTTAAGAGTAAATATATAAAAAGTTAATATAATGTAATACCTGTTTTACTTGGTAATAAAGAATTGGAGAATATTGGAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435745 lncRNA downstream 38678 33272894 ~ 33274755 (-) True G2130263
TU2435746 lncRNA downstream 46238 33261645 ~ 33267195 (-) True G2130264
TU2435769 lncRNA downstream 57457 33227158 ~ 33255976 (-) True G2130286
TU2435877 lncRNA upstream 2605 33383805 ~ 33384077 (-) True G2130382
TU2435879 lncRNA upstream 6328 33387528 ~ 33387751 (-) True G2130384
TU2435880 lncRNA upstream 6832 33388032 ~ 33388359 (-) True G2130385
TU2435882 lncRNA upstream 8832 33390032 ~ 33390255 (-) True G2130387
TU2435889 lncRNA upstream 18535 33399735 ~ 33400010 (-) True G2130394
XM_021589972.2 mRNA downstream 142 33310003 ~ 33313291 (-) True dynlt5
XM_036966879.1 mRNA downstream 6140 33278554 ~ 33307293 (-) True LOC110508227
XM_036966878.1 mRNA downstream 6261 33278554 ~ 33307172 (-) False LOC110508227
XM_036966733.1 mRNA upstream 25473 33406673 ~ 33485169 (-) False LOC110509034
XM_036966732.1 mRNA upstream 25473 33406673 ~ 33514461 (-) False LOC110509034
XM_036966734.1 mRNA upstream 25477 33406677 ~ 33422858 (-) False LOC110509034
XM_021589978.2 mRNA upstream 137504 33518704 ~ 33526697 (-) True LOC110509036
XM_021589979.2 mRNA upstream 173817 33555017 ~ 33562140 (-) True LOC110509037
TU2434271 other downstream 1083219 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1148411 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 1148411 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 1148411 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 1284875 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 17347 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 659006 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 660238 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 660369 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 663490 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile