RNA id: XM_036966733.1


Basic Information

Item Value
RNA id XM_036966733.1
length 5070
RNA type mRNA
GC content 0.47
exon number 17
gene id LOC110509034
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33406673 ~ 33514461 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGAGCCACTGTCCGTTGTGTTTCCAGGTCACTCACCTCGACACTAGCCTTGGAGCACCAGACAGGCCAACATATAATATGGACTTTATGTCAGCCTTATCACTATGACGCAAATTCTCCCTGTCACTAAAAAAAATCCACAATGGTGTCAGATATTGACTTTGTCCTGTCACAAAGATGTACCGCCCTTTCCTGATTTATTATTGAGCTATTTCCAAGCCCCCAGCTGAAGCCCTGTAGTTCAAAGATTACAGACTGTACAGGCCAAGACCTTCAGGCACAGTGTGTGACGGTACAAGATTGATTCAACTGTGGGTTGATTAACTGTCGCACCCTTCAACCTACTTTGTTCATGATTAACCCTATTGTTTTCTAATGGTTCTGCTTCACTCAATTTTCTACAGAGACCCAGCATGTCGTGTAAACAGCAGGGCTTCCAAAGGTGCGTTAGTAGAGGTGCCCAGTGAAGAAGGAACAGAAGAGGAGTTTatgaataaagagagagactgactgattGACACCACTGAGGATGAAGAAGAGCAGAAGTGTGTTAGCGGTGTCACCAGGCGGTGACACCAATGAGACCCCGGGAGTGTTCGGCAGCACTCTTGGAGTGGACCTTTGCCGGGGCCGCAGGCGTCACTCGGGCACGCTACAGCTGCCCCCGTTGTCATGGCGACAGGCGGAGAGGGATCTAAGCCGCGCGCCAGAGGGGGACACCATGGCCCGGCCCACCACCCTGCCCTTCCACCCACTGCCACAGATCAACATCATCCACGCCGACCCCGACAGCTTCGATGTGGAGAATGGCCCGTCTGCGTGCTGCAGCCCCTCGGGTCTCCAGGCGTCCCCTGGCTCCGGCCTGGTCCTGCACCCCAACCTGGGGGCCCACGGGCAGCGCCGAGAGTCCTTCCTCTACCGCTCTGACTCGGACTACGACCTGTCGCCCAAGTCTCGCGAGTTGTCCCGGAACTCCTCTATCGTCGGAGAACTGCATGGAGAAGACCTGATCGTGACCCCCTTTGCTCAGGTTCTTGCCAGTCTCCGCACGGTACGGAACAACTTCACCACCTTGACCAATGTACAATGTACCTCCAAGAGATCACCTGCTGGCCCCCAGCCTCCCGTCACCAGAGTCTGTCAGTCAGACGAGTCGTACCAGAAGCTAGCCATGGAGACCATGGAGGAGCTGGATTGGTGCCTGGACCAGCTGGAGACCATCCAGACCTACCGCTCCGTCAGCGACATGGCCTCCAACAAGTTCAAGAGGATGTTGAACCGGGAGCTGACGCACCTGTCGGAGATGAGTCGCTCCGGCAACCAGGTGTCAGAGTTCATCTCCAACACCTTCCTTGaCAAGCAGAATGAGTTGGAATTACCGTGCcccatggccaagaccagagagtgGAAGAAGAGACCCCACCACCAGACCCAGCTGGAGGGTCAGGGGACCTTGACCCAGATCAGCGGGGTCCGGAAGCTCAGCCATTCCACTGGGCTCCAAGGCAGCAGCATCAGCCGCTTTGGGGTCAAGACAGATCAGGAGGACCTGCTGTCTAAGGACCTTGAGAACATCAACAAGTGGGGTTTGAACATCTTCAGGGTGGCCGAGCACTCCCACAACCGCCCGCTCACATGCACCATGTACACCATCTTCCAGGAGCGAGACCTGATGAATACGTTTAAAATCCCTACGGACACCTTCGTGACCTTCATGATGACCCTGGAGGCCCACTACCACTCAGACGTAGAATACCACAACAGCCTCCACGCTGCAGACGTGGCCCAGTCCACACACATCCTGCTCTCTACACCCGCTCTGGACGCCGTCTTCACGGATCTGGAGATCTTGGCGGCCGTCTTTGCGGCAGCCATCCATGACGTGGACCACCCTGGGGTCTCCAACCAGTTCCTCATCAACACCAaCTCAGAGCTGGCCCTGATGTACAACGATGAGTCTGTCCTGGAGAACCACCACCTGGCTGTGGGCTTTAAGCTGCTGCAGGAAGACAACTGTGACATCTTCCAGAACCTGACCAAGAAAGAACGCCAATCCCTCCGCAGGATGGTCATAGACATGgtcctGGCCACAGACATGTCTAAACACATGAGCCTATTGGCTGACCTGAAGACCATGGTGGAGACCAAGAAGGTGACCAGCTCTGGAGTGCTGCTGCTGGACAACTACACAGACAAGATACAGGTGATGCGTAACATGGTTCACTGTGCTGACCTCAGTAACCCCACCAAGTCTCTGGACCTTTACCGTCAGTGGACCGACCGCATCATGAACGAGTTCTCCCACCAGGGAGACCGCGAGAGGGAGAAAGGCATGGAGATCAGCCCCATGTGTGACAAGCATACGGCTTCAGTGGAGAAGAGCCAGGTGGGTTTCATAGACTACATCGTCCACCCGCTGTGGGAGACATGGGCCGACCTGGTGCACCCAGACGCCCAGGACATCCTGGACACCCTGGAGGACAACAGGAACTGGTACCAGAGCATGATCCCTCAGAGGCCCTCTCCCCCCTTCTGCACCGGTGACggagagggggacggagaggGAGGACACAGATTCCAGTTTGAGCTGACGCTAGATGATGaacaggatggagagatgggagtggaggagggcgagagagggacgGAAGAGGGGTGGTCGCCAGTTGAACAGGGCGGAGTGTAGATGAACACACGTGGGGCTTCCCCCACATAATGAGTCGTGACCTGCTATCTTCATAAATGGAAGCACCAGTTTTAGGTTGTGTTTCACATCTTGTTTTACTGCAGTGGAGGAATCCTGCAATCTGGCTCTTTGGCGTTGCTCTGCTTATGCACTAGGGCCTGACTGGCTTTGGGCCCATGCAGAAGAGGGTGGGGAACCACAACACTTGATTTGGGAGCCCTCAGGAAGAAGAGTATGAAGAGTTGAAGAGTGATGCCTTGAAGGAGTCCTGTTGAAAATGCTAGTGTGTGACAGAATCTTGGTTTTTGGTAGCCAGATAATACAATCTTTGTTCTGACAAATACTGAAGATGACACTAAGCTAGGCGAAGACACTCTGTTGCGTTCAATTGGGACAAGATGAAATACTTGCACTTCAGAGCGATCTTTGTTCTTCGTGACTATTTTCGAGTACATGTTTTGTTTTGTAACAGGATGGGTTGTTGCCGGGTAGCATCCTATGTTCAAACTAGTGATCCACAGGTGTTTATAACAAAGAACATCTACCCAAAGAACATCTACCCTAAGAACATCTACCCTAAGAACATCTACCCTAAGAACATCTACCCTAAGAACATCTACCCTAAGAACAAGTGTTTAAAGACTTTTGTGTGCCTTTTGTTGTTTACGACAGGGTATTTTGGACGTGATTTTATAATTTATTGAACAGGTTTGAACACGTCTTCCTGATGTTTTTTCGGCAATAGTCGCACAAGTTGCACTTTTTCTAAGGGTAGGAAGGGAGCTGGGAAAATGTTTAAACTAAAGAGTCAATAAATCTACTAATGAGAGGTTCTTCATTACAGCCAATTCATGACTCTATACATGTATTGTTGTATGGTACCTCACACATTTCAAATCAATATCAACAAATGCCACAGAACCTACATGTTCCATTTTCACAGCAAAAGGCAGTTTGCAAacctgttacttttgattttacaTATTTGCTTCACCGTAAAGCAATGATCTCGATCTTTTCCCATGTAATCTGTCAAAACCAAGACGCTCCAAAGACGTCCTGATTAATGCACATTAACAGCCGAATGGAACTCTGCCCTAAGAGAGGTGTATTGCCATACCTGATTAAAACTTCAATCAAATttcttcatatatatatataaatatatatatatatttttttttttgtaattttccATATCACCCTTCCAAGAATGGAAGAGGTGTAAATTTGATATCTTAATATAATGAATGCATATAATTAAATAATTGAGGCCAATCAAAGTAAACCTTTGAATGGTTTCtttccagacagagagagagagacatctgatATTCTGAAGCCCAAGACCAAAGTCAAAAAAACAAACCTCTATTCAACAATGTCTGATGTCAGCTAATGTTACTATTTTGCCATATTCTCCTTGAGCTGACGAGGTGTCAGGATATGGCAAAATAGTTTAGGCAGAAATGGCAGAACAAAAACTAAACCAAAAAACAAATGTCATCTTTTTAAATGTTGATTCAATGATAATTTAATGTAAATCTAAAATGTCCCCTGTAGTTTTCTCCATAATTTCTGTCAAGCACTTTGACCAGTTGGATAGCTCAGCGCCTAGTTGCTAGTCTGTCAGCAATACATCTAAATGGTACTGCGATGTAAACTGCAGCTCTCAGCTGTGGGGAGATCAGCAGAACATCACTATGTGACAACATTTCCCAcatttactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatgaggaaAACTTAGCCACTCAATCTCCTCTTCTTTTCACCTAGTTCTGTGTCAAACCTTGAACTGTCTGAAACAGTGTATTTATAATCTTTCATCTGTAAATAGAATAATATTTATAAAATGTACATTTGGTATCATTTATATGCACTACCATTACTTGTCAAAACAAGTCAAACATTTGTTCAACTGTATAATCCTCAAGATTTACACAGAACATTCTTAAACAGCCTTTCAGATTCACAATGGTGACATTGGTGACAATGGTGACATTGGTGACATTGGTTACAATGGTGACATTGGTGACAATGGTGACATTGTGAATTGTTAAACTGATTGCCAAGAAATGTCAATTGCCAACTTGAATTTCTCAATAAATTGTTTTGGGGAAATACTCTCAAACTAAACCATTCCAGGATTTGAAATTCAAATGGTTGGTTAGGATCTGGAAATCCCTAaatctacagtagtctacagtagtctacagtagtctacagtagtctatagtagtctacagtagtgtacagtagtttatagtagtctacagtagtctatagtagtctatagtagtctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435889 lncRNA downstream 6663 33399735 ~ 33400010 (-) True G2130394
TU2435882 lncRNA downstream 16418 33390032 ~ 33390255 (-) True G2130387
TU2435880 lncRNA downstream 18314 33388032 ~ 33388359 (-) True G2130385
TU2435879 lncRNA downstream 18922 33387528 ~ 33387751 (-) True G2130384
TU2435877 lncRNA downstream 22596 33383805 ~ 33384077 (-) True G2130382
TU2435965 lncRNA upstream 67714 33552883 ~ 33554094 (-) True G2130462
TU2435980 lncRNA upstream 92623 33577792 ~ 33578201 (-) True G2130476
TU2435990 lncRNA upstream 108545 33593714 ~ 33594568 (-) True G2130484
TU2436016 lncRNA upstream 146664 33631833 ~ 33632058 (-) True G2130506
TU2436018 lncRNA upstream 150394 33635563 ~ 33635926 (-) True G2130508
XM_036966871.1 mRNA downstream 25473 33313433 ~ 33381200 (-) True LOC110509030
XM_036966872.1 mRNA downstream 26007 33313433 ~ 33380666 (-) False LOC110509030
XM_036966873.1 mRNA downstream 26008 33313433 ~ 33380665 (-) False LOC110509030
XM_036966874.1 mRNA downstream 26008 33313433 ~ 33380665 (-) False LOC110509030
XM_036966875.1 mRNA downstream 26008 33313433 ~ 33380665 (-) False LOC110509030
XM_021589978.2 mRNA upstream 33535 33518704 ~ 33526697 (-) True LOC110509036
XM_021589979.2 mRNA upstream 69848 33555017 ~ 33562140 (-) True LOC110509037
LOC110508228 mRNA upstream 78766 33563935 ~ 33568603 (-) True LOC110508228
XM_021589980.2 mRNA upstream 86941 33572110 ~ 33575990 (-) False LOC110509038
XM_021589981.2 mRNA upstream 86941 33572110 ~ 33575991 (-) True LOC110509038
TU2435888 other downstream 7589 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1176459 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1241651 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 1241651 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 1241651 32157032 ~ 32165022 (-) False asip2b
TU2436339 other upstream 555037 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 556269 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 556400 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 559521 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 1000700 34485869 ~ 34486176 (-) True G2131621

Expression Profile