RNA id: XM_036966734.1


Basic Information

Item Value
RNA id XM_036966734.1
length 4087
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110509034
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33406673 ~ 33514461 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAGGAGTTGTTTAGCTTAGTCACTGTGtgggccagccagccagtcaggttTTATCCCTTTATTTTTCCGACTGTCGCCAGAAGAGAATCGGCTTGAAAATAGAGAGGAAGCAGACACAGAAAGATAAACAGAGACACGCTCACGTATTTCACAGAAGTTTTGGGAAGTTTCAAGTTTTGCGAAGTTTATATTGTACGTGTGGCATTGCCTTTGCAAGAATGGGGCTATGCTGCTCTGAGACCAAGGAGAAATCGTTTGGGATGCTTACGCACTGGAAACAGTTCAAGAGGATGTTGAACCGGGAGCTGACGCACCTGTCGGAGATGAGTCGCTCCGGCAACCAGGTGTCAGAGTTCATCTCCAACACCTTCCTTGaCAAGCAGAATGAGTTGGAATTACCGTGCcccatggccaagaccagagagtgGAAGAAGAGACCCCACCACCAGACCCAGCTGGAGGGTCAGGGGACCTTGACCCAGATCAGCGGGGTCCGGAAGCTCAGCCATTCCACTGGGCTCCAAGGCAGCAGCATCAGCCGCTTTGGGGTCAAGACAGATCAGGAGGACCTGCTGTCTAAGGACCTTGAGAACATCAACAAGTGGGGTTTGAACATCTTCAGGGTGGCCGAGCACTCCCACAACCGCCCGCTCACATGCACCATGTACACCATCTTCCAGGAGCGAGACCTGATGAATACGTTTAAAATCCCTACGGACACCTTCGTGACCTTCATGATGACCCTGGAGGCCCACTACCACTCAGACGTAGAATACCACAACAGCCTCCACGCTGCAGACGTGGCCCAGTCCACACACATCCTGCTCTCTACACCCGCTCTGGACGCCGTCTTCACGGATCTGGAGATCTTGGCGGCCGTCTTTGCGGCAGCCATCCATGACGTGGACCACCCTGGGGTCTCCAACCAGTTCCTCATCAACACCAaCTCAGAGCTGGCCCTGATGTACAACGATGAGTCTGTCCTGGAGAACCACCACCTGGCTGTGGGCTTTAAGCTGCTGCAGGAAGACAACTGTGACATCTTCCAGAACCTGACCAAGAAAGAACGCCAATCCCTCCGCAGGATGGTCATAGACATGgtcctGGCCACAGACATGTCTAAACACATGAGCCTATTGGCTGACCTGAAGACCATGGTGGAGACCAAGAAGGTGACCAGCTCTGGAGTGCTGCTGCTGGACAACTACACAGACAAGATACAGGTGATGCGTAACATGGTTCACTGTGCTGACCTCAGTAACCCCACCAAGTCTCTGGACCTTTACCGTCAGTGGACCGACCGCATCATGAACGAGTTCTCCCACCAGGGAGACCGCGAGAGGGAGAAAGGCATGGAGATCAGCCCCATGTGTGACAAGCATACGGCTTCAGTGGAGAAGAGCCAGGTGGGTTTCATAGACTACATCGTCCACCCGCTGTGGGAGACATGGGCCGACCTGGTGCACCCAGACGCCCAGGACATCCTGGACACCCTGGAGGACAACAGGAACTGGTACCAGAGCATGATCCCTCAGAGGCCCTCTCCCCCCTTCTGCACCGGTGACggagagggggacggagaggGAGGACACAGATTCCAGTTTGAGCTGACGCTAGATGATGaacaggatggagagatgggagtggaggagggcgagagagggacgGAAGAGGGGTGGTCGCCAGTTGAACAGGGCGGAGTGTAGATGAACACACGTGGGGCTTCCCCCACATAATGAGTCGTGACCTGCTATCTTCATAAATGGAAGCACCAGTTTTAGGTTGTGTTTCACATCTTGTTTTACTGCAGTGGAGGAATCCTGCAATCTGGCTCTTTGGCGTTGCTCTGCTTATGCACTAGGGCCTGACTGGCTTTGGGCCCATGCAGAAGAGGGTGGGGAACCACAACACTTGATTTGGGAGCCCTCAGGAAGAAGAGTATGAAGAGTTGAAGAGTGATGCCTTGAAGGAGTCCTGTTGAAAATGCTAGTGTGTGACAGAATCTTGGTTTTTGGTAGCCAGATAATACAATCTTTGTTCTGACAAATACTGAAGATGACACTAAGCTAGGCGAAGACACTCTGTTGCGTTCAATTGGGACAAGATGAAATACTTGCACTTCAGAGCGATCTTTGTTCTTCGTGACTATTTTCGAGTACATGTTTTGTTTTGTAACAGGATGGGTTGTTGCCGGGTAGCATCCTATGTTCAAACTAGTGATCCACAGGTGTTTATAACAAAGAACATCTACCCAAAGAACATCTACCCTAAGAACATCTACCCTAAGAACATCTACCCTAAGAACATCTACCCTAAGAACATCTACCCTAAGAACAAGTGTTTAAAGACTTTTGTGTGCCTTTTGTTGTTTACGACAGGGTATTTTGGACGTGATTTTATAATTTATTGAACAGGTTTGAACACGTCTTCCTGATGTTTTTTCGGCAATAGTCGCACAAGTTGCACTTTTTCTAAGGGTAGGAAGGGAGCTGGGAAAATGTTTAAACTAAAGAGTCAATAAATCTACTAATGAGAGGTTCTTCATTACAGCCAATTCATGACTCTATACATGTATTGTTGTATGGTACCTCACACATTTCAAATCAATATCAACAAATGCCACAGAACCTACATGTTCCATTTTCACAGCAAAAGGCAGTTTGCAAacctgttacttttgattttacaTATTTGCTTCACCGTAAAGCAATGATCTCGATCTTTTCCCATGTAATCTGTCAAAACCAAGACGCTCCAAAGACGTCCTGATTAATGCACATTAACAGCCGAATGGAACTCTGCCCTAAGAGAGGTGTATTGCCATACCTGATTAAAACTTCAATCAAATttcttcatatatatatataaatatatatatatatttttttttttgtaattttccATATCACCCTTCCAAGAATGGAAGAGGTGTAAATTTGATATCTTAATATAATGAATGCATATAATTAAATAATTGAGGCCAATCAAAGTAAACCTTTGAATGGTTTCtttccagacagagagagagagacatctgatATTCTGAAGCCCAAGACCAAAGTCAAAAAAACAAACCTCTATTCAACAATGTCTGATGTCAGCTAATGTTACTATTTTGCCATATTCTCCTTGAGCTGACGAGGTGTCAGGATATGGCAAAATAGTTTAGGCAGAAATGGCAGAACAAAAACTAAACCAAAAAACAAATGTCATCTTTTTAAATGTTGATTCAATGATAATTTAATGTAAATCTAAAATGTCCCCTGTAGTTTTCTCCATAATTTCTGTCAAGCACTTTGACCAGTTGGATAGCTCAGCGCCTAGTTGCTAGTCTGTCAGCAATACATCTAAATGGTACTGCGATGTAAACTGCAGCTCTCAGCTGTGGGGAGATCAGCAGAACATCACTATGTGACAACATTTCCCAcatttactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatgaggaaAACTTAGCCACTCAATCTCCTCTTCTTTTCACCTAGTTCTGTGTCAAACCTTGAACTGTCTGAAACAGTGTATTTATAATCTTTCATCTGTAAATAGAATAATATTTATAAAATGTACATTTGGTATCATTTATATGCACTACCATTACTTGTCAAAACAAGTCAAACATTTGTTCAACTGTATAATCCTCAAGATTTACACAGAACATTCTTAAACAGCCTTTCAGATTCACAATGGTGACATTGGTGACAATGGTGACATTGGTGACATTGGTTACAATGGTGACATTGGTGACAATGGTGACATTGTGAATTGTTAAACTGATTGCCAAGAAATGTCAATTGCCAACTTGAATTTCTCAATAAATTGTTTTGGGGAAATACTCTCAAACTAAACCATTCCAGGATTTGAAATTCAAATGGTTGGTTAGGATCTGGAAATCCCTAaatctacagtagtctacagtagtctacagtagtctacagtagtctatagtagtctacagtagtgtacagtagtttatagtagtctacagtagtctatagtagtctatagtagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435889 lncRNA downstream 6667 33399735 ~ 33400010 (-) True G2130394
TU2435882 lncRNA downstream 16422 33390032 ~ 33390255 (-) True G2130387
TU2435880 lncRNA downstream 18318 33388032 ~ 33388359 (-) True G2130385
TU2435879 lncRNA downstream 18926 33387528 ~ 33387751 (-) True G2130384
TU2435877 lncRNA downstream 22600 33383805 ~ 33384077 (-) True G2130382
TU2435899 lncRNA upstream 3560 33426418 ~ 33426855 (-) True G2130404
TU2435904 lncRNA upstream 9897 33432755 ~ 33433053 (-) True G2130409
TU2435833 lncRNA upstream 17544 33440402 ~ 33450543 (-) True LOC110509034
TU2435965 lncRNA upstream 130025 33552883 ~ 33554094 (-) True G2130462
TU2435980 lncRNA upstream 154934 33577792 ~ 33578201 (-) True G2130476
XM_036966871.1 mRNA downstream 25477 33313433 ~ 33381200 (-) True LOC110509030
XM_036966872.1 mRNA downstream 26011 33313433 ~ 33380666 (-) False LOC110509030
XM_036966873.1 mRNA downstream 26012 33313433 ~ 33380665 (-) False LOC110509030
XM_021589978.2 mRNA upstream 95846 33518704 ~ 33526697 (-) True LOC110509036
XM_021589979.2 mRNA upstream 132159 33555017 ~ 33562140 (-) True LOC110509037
LOC110508228 mRNA upstream 141077 33563935 ~ 33568603 (-) True LOC110508228
XM_021589980.2 mRNA upstream 149252 33572110 ~ 33575990 (-) False LOC110509038
XM_021589981.2 mRNA upstream 149252 33572110 ~ 33575991 (-) True LOC110509038
TU2435888 other downstream 7593 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1176463 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1241655 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 617348 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 618580 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 618711 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 621832 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 1063011 34485869 ~ 34486176 (-) True G2131621

Expression Profile