RNA id: XM_021589978.2


Basic Information

Item Value
RNA id XM_021589978.2
length 2217
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110509036
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33518704 ~ 33526697 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACAGAATGAACCcgtgtactactactaccaggctATTTCAATTAGTTACGATGAAATACTTCAATTCAGGAGCAATTTTACAGCAAAGAATATTTTGCACAGTAGGTGTCAAGAACATTCCGTAGCTGAGCTCAATATTAACATTGTGATAATATAAATACAGTGGAAATGGAAAAGTAGACTAAACGCAGAGAGAACAAATGGCTCCTTTAAGAAAGTCAGCTGGTGCAAATAAAAAGTTCGAAGGAGGAAGTAGGAAGTCGTTTACGAACAAACCAAGCACAAAGAAGAGAAATTGACAATTTCAGACATAAGACAATGGCGGGTATTAAAGCGCTGGTTGGCTTGTCCTTCAGTGGAGCTATTGGCTTGACTTTCCTGCTGTTGGGCTGTGCATTGGAGCAGTATGGGGTGTACTGGCCTCTCTTCGTCCTCATCTTCTACATACTGTCTCCTATCCCCACCTTCATATCCAGAAGGCTCAGTGATGACAGTGACGCCGCCAGCAACGCATGCAGAGAGCTGGCATGCTTCTTCACTACGGGCATTGTGGTGTCTGCGTTCGGGCTTCCCATCATACTGGCCCGGGTTGCATTAATCCAGTGGGGGGCCTGTGGCCTGGTGATGGCTGGCAACGCTGTCATCTTCCTGACCATCCTGGGCTTCTTCCTGGTGTTCGGCGGGGGAGACGACTTCAGCTGGGAGCAGTGGTAGACCGTCTGGATCTCTGGCACCAtcccaaatggacccctagaccctaCGCCCTAtggacttgtggagatctgagattTGACCGGTGCAAGCAATATGGCAGTAGCTTCaccttgccctctgataggctaggtgGAAGTTTCACCATATTGTTTAAACCAATCAAATCTACTCTGATCTCTGAAAGTGCATAGGGTGTAGGGTCTAGGGATCGATTGGGACACAGAGACGGAGGGAGTCAGTCATTCCTGTTATTAACAAGGTTACAGTGGTGGACAGATATGATAAACCAAAACGCTACTACGGCATAACGTCGCTACTAACTGACGTTTTAAGAAGCTGATGCTGACTATTTAATGTCCTATGAGAAAAGGGGGTGGCACCAGGAGTGCCCTCCCCTCCTGGTTAGTGAGGAGGGGGTGGCACTAAACAGGGTGTCTGGGATGTTAATGCACACTGCGATGTCTGTCCTTTTTTTCCTCCACAGACACCTGATCGTTTTTTCTTATAGTATTCGCTCCATTATTCTCTTCAACCTTTTTTTGCCTTACCTGTCCCCTATGCTGAGGGAGAGTCATTGAAAACCAGTGTCCCGgccagcccccccctccccccagcccccccccccctccctaggAACTTGTTGATCTCAGTGAGAAGACAGGATAGGTGTAAGCATGTGGTGAAATATCACCAAGGGGAAACGTTCTTTTAACATCTACACAAGTGTCTAGGGCTAGAGTGGTTGTTTCTGGACCAGGCCCACCTCTCTACATTCATATCTATAAAGCCAGATGCTAGTTTAAGGATCATGATAACTTGTACGTGTGTTATGAGGGATACTGTTGAATGATTTGTTGTAATCACCACTACGCCgtctgtttccacttcatttaGGGAGTATTCTGTTTGTTTGTGGAAATCTTATTTAAGCGTAAGCATTTCAAATGATCTACTCATTCTTACAGTTGATTGTGTGTGtacctttttttttgtttgtatgtttctatttcaTATGATCACTTTGGGTATGACTTCATAACCAGGTCAAGgtttctgtctgtagtttgttgTTTTCAACATGTTGCCCTTCTGCAAATGTTTCCACCAATACCAAAGGCCATTTTTAAGAAAATAAGGTAGACATGATTCATTCCCCCCACTAAGGTTTCTGATGTGTCTATGATTATGAAACACACAGTTCATATTAATTATGAAAACAACATTGTTATGCCATTATAAGCTGTTTGTCTTCACTGAGGACAGAGGCTAACGTAAGGGTTTGTGAATCATTGTCTACATTAGTATGGGAATGTAAACACTATATGTTTTGTAGACCAGGTCTGTTTGTGTTCAAATGAAGTGCCCACATTTCTATTCACCAAAAAACTCATTGACAAGTGCCTGTTaaatatcaacaacaaaaaatgtacttattcaaaaatgttttatataACTTAAGTCACTTTTTACATTCTGTACTGGTAAAgcctgaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435833 lncRNA downstream 68161 33440402 ~ 33450543 (-) True LOC110509034
TU2435904 lncRNA downstream 85651 33432755 ~ 33433053 (-) True G2130409
TU2435899 lncRNA downstream 91849 33426418 ~ 33426855 (-) True G2130404
TU2435893 lncRNA downstream 105341 33412968 ~ 33413363 (-) True G2130398
TU2435889 lncRNA downstream 118694 33399735 ~ 33400010 (-) True G2130394
TU2435965 lncRNA upstream 26186 33552883 ~ 33554094 (-) True G2130462
TU2435980 lncRNA upstream 51095 33577792 ~ 33578201 (-) True G2130476
TU2435990 lncRNA upstream 67017 33593714 ~ 33594568 (-) True G2130484
TU2436016 lncRNA upstream 105136 33631833 ~ 33632058 (-) True G2130506
TU2436018 lncRNA upstream 108866 33635563 ~ 33635926 (-) True G2130508
XM_036966732.1 mRNA downstream 4243 33406673 ~ 33514461 (-) False LOC110509034
XM_036966733.1 mRNA downstream 33535 33406673 ~ 33485169 (-) False LOC110509034
XM_036966734.1 mRNA downstream 95846 33406677 ~ 33422858 (-) False LOC110509034
XM_036966871.1 mRNA downstream 137504 33313433 ~ 33381200 (-) True LOC110509030
XM_036966872.1 mRNA downstream 138038 33313433 ~ 33380666 (-) False LOC110509030
XM_021589979.2 mRNA upstream 28320 33555017 ~ 33562140 (-) True LOC110509037
LOC110508228 mRNA upstream 37238 33563935 ~ 33568603 (-) True LOC110508228
XM_021589980.2 mRNA upstream 45413 33572110 ~ 33575990 (-) False LOC110509038
XM_021589981.2 mRNA upstream 45413 33572110 ~ 33575991 (-) True LOC110509038
trnav-cac-89 mRNA upstream 55863 33582560 ~ 33582632 (-) True trnav-cac-89
TU2435888 other downstream 119620 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1288490 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1353682 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 513509 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 514741 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 514872 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 517993 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 959172 34485869 ~ 34486176 (-) True G2131621

Expression Profile