RNA id: XM_021589979.2


Basic Information

Item Value
RNA id XM_021589979.2
length 947
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC110509037
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33555017 ~ 33562140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCTGTTGTGACTGAAGTGGACAAGGACACAGGTAGCCCATGTATCCCCTGCCTGGACAGCGAGTGGAACCCCAGCATCTCAATCACCAGTATTCTTCTGAGCATCCAGACCATGCTGTCCAACCCAGTCCTGGAGGGAGCGGTGAACCCCGAAGCTGCTGACATGCTCTGGTCCAGCCCATCCACCTACCACCGTGTGGTGCTGGAATGTGTCAGGGCCAGCCAGGAACTGGAGAGGAACAGGAAAGCTGTGCAGTTGAACTCACACAACAGGCCTGTGAGGAGAATCCCCTTTGAGGATTATCTGAAGACATGGACAAAGATGGCCACCACTAAAGCTGGCTCGTGGATGAGGAAGGAATCCCTGGAGGATCTCATCAAGCGCCCTGAGACCTTTGCCATGTATCATGGGACACCAGACAAGGACTCTCCCATGGGGACACAGTGTGAAACGTTCAGAGCCTTAATGTATGGTACCGTGCACCAGCCTAAGAAGACCAAACCAGTGAGTGAGTGGAGACAGGCGAGGATGGACCAAATGAGAAAGATTTACCTCCTCTACAGAACACCAGACATGCTGACCCCCCAGGTGAATGTGCAGAGAGACTCCATGGCCACCAGGAGTCTCTGTCGAGCACATGACAAACAGCAACAGGACCTCTGGGAGAACGAGGTGGACAAACTGGTGGCCTGGACACACTCACTGTCATTCGAGGAGTTGGAGGAGGAGTGATGCCTCCACGTGCATGTACATACACGCCTTGCAATTAGATACacttgaccaataaaatgtgaaaaCGTCTTGTACTTTATTATTATATagaaatattttcttcttcttgaactgcactgttggttgagggcttgtaagaaagcatttcactgtaaagtctacactgttggttaagggcttgtaagaaagcatttcactgtaaagtctacact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435965 lncRNA downstream 923 33552883 ~ 33554094 (-) True G2130462
TU2435833 lncRNA downstream 104474 33440402 ~ 33450543 (-) True LOC110509034
TU2435904 lncRNA downstream 121964 33432755 ~ 33433053 (-) True G2130409
TU2435899 lncRNA downstream 128162 33426418 ~ 33426855 (-) True G2130404
TU2435893 lncRNA downstream 141654 33412968 ~ 33413363 (-) True G2130398
TU2435980 lncRNA upstream 15652 33577792 ~ 33578201 (-) True G2130476
TU2435990 lncRNA upstream 31574 33593714 ~ 33594568 (-) True G2130484
TU2436016 lncRNA upstream 69693 33631833 ~ 33632058 (-) True G2130506
TU2436018 lncRNA upstream 73423 33635563 ~ 33635926 (-) True G2130508
TU2436024 lncRNA upstream 87336 33649476 ~ 33649702 (-) True G2130514
XM_021589978.2 mRNA downstream 28320 33518704 ~ 33526697 (-) True LOC110509036
XM_036966732.1 mRNA downstream 40556 33406673 ~ 33514461 (-) False LOC110509034
XM_036966733.1 mRNA downstream 69848 33406673 ~ 33485169 (-) False LOC110509034
XM_036966734.1 mRNA downstream 132159 33406677 ~ 33422858 (-) False LOC110509034
XM_036966871.1 mRNA downstream 173817 33313433 ~ 33381200 (-) True LOC110509030
LOC110508228 mRNA upstream 1795 33563935 ~ 33568603 (-) True LOC110508228
XM_021589980.2 mRNA upstream 9970 33572110 ~ 33575990 (-) False LOC110509038
XM_021589981.2 mRNA upstream 9970 33572110 ~ 33575991 (-) True LOC110509038
trnav-cac-89 mRNA upstream 20420 33582560 ~ 33582632 (-) True trnav-cac-89
XM_036966528.1 mRNA upstream 64311 33626451 ~ 33797286 (-) True LOC110508229
TU2435888 other downstream 155933 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1324803 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1389995 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 478066 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 479298 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 479429 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 482550 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 923729 34485869 ~ 34486176 (-) True G2131621

Expression Profile