RNA id: XM_021589981.2


Basic Information

Item Value
RNA id XM_021589981.2
length 2172
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC110509038
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33572110 ~ 33575991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCTGTGGTGTCTTTTCAAGGGAAGAGGGGACTGAAGCGGCTGGCCAGCTCACTACCAACACCTTGAAGGTCTCAagacagaaaaaaaaacacataatgaAGCTAACGCTAACCTTTCTGTTCGTTCTTGTGGCTTCCTGGCCCCTGGTCCTCTGCGCCAAGGAGGAGCCCATGTCCAAAGATTCTCCTCTACCTCAGGTTCCCGCCGTTGAAACTCGCTCCCGCTTCGCCGCTCTGGATGACGTGCGCCTCCTGGCCAACGGTCTCCTCCAGCTCGGCCACAGCCTCAGGGACTTCGTCCATAAGACCAAGAGCCAGATAAACGACATCTTCCAGAAACTCAACATCTTCGACAGCTCCTTCAACCAGCTCTCCGTGCTGGCCAGCGAGAtcaagggggaagaggaggagctgAAGAAAACCACAGTGGTGCTCAAGGCCAACAACGAAGAGATACGGAATCTGTCGCTGGAGATCAATTCAAAAGTGGAGAGCATCCTGCAGGAGCGTAGCCAGCTTCGGAGCAAGGTGGGAGGGCTGGAGGTGAAGCTGAGCAGCCTGTCTCAGGGCCTGGTCCCCGCCGAGCAGCTGGCTGAGATCAACTCACTGAAGGATGTGATCCACACCCAGGAGAGGAGCATCAGTGAGCTGCTGAAGGCTGTGAGAGAGCAGAGCGACCAGCTCGACCACCAGAGGAGCAAGATGAAAACTCTGGAGCTCACCTACAACCCTTTCATGCAAGAGACCATTGAGAAACCATCTGACAACTTCCAGTCTGCCACACCCACCCTCGCTGGGTATTTGACCAACACCTCCACCAATGGCAGTTTGGACATGACGGATCTCTCATCAGACTGCAGTGAGCTATTCAACAAGGGCGAGAGAGCCAGTGGAGTGTACGCCATCAAGCCTAACCAATCTGAGCCCTTCATGGTCTACTGTGACATGGGTGAAGATGGAGGCGCTACTGTCATCCAAAGAAGGAAGGATGGGTCGATGAATTTCCATCAGAATTGGGAGAAATATGAAAACGGATTTGGAGACTTTCAAGGAGAGTTCTGGCTGGGCCTGAGGAAGATCCACTCCCTCGCTAGTCAAGGTGACACTTTCCTGAACATCCAACTGGAGGACTGGAAAAGGGGCAAGCGCTTCATTGAGTACAACTTCTCTCTGGATGGACCCGAGGCCCACTATAGAATCCACCTCTCACAGGCGTCCGGAAATCTGCCTGACGCAATGAGCAACCACACCGGTATGATGTTCTCCACCAAGGACCAGGACAATGACAAACTTGAAGACTCACACTGTGCCTATACCTACACAGGCGGCTGGTGGTTCAACGCTTGCGGAGACACCAATCTGAACGGGAAATATATCCACGTGAGACCCAAGGGACGGTCAGAGCGTAGGAGGGGAATCCACTGGAAGCCAACCCGAGGGGCCTCCTACTTCCTCCGATCCACCCAGATCTCCATTCGCTCCACCCCTGCCACTACCTTCGCTTCAACCTCCTCAGAGACAGGCAACTTCAGCTCAGAATGAACACCAGACATTTGGCGAAAATATGTGATAAGTCTCTGACAACGAGGCCTTAAGGAGATTTAGGAGGTCAGTTTAGTGAGTCTCTTCTGTCGACTGCACAGTCGGACCAAGTTGATTGAATAGGACTCTGAATCTGTGTCTCTAAACCACAGTTTGCCTTATAGCTAGTCTGAAAAGGATTCACTTCTCCTCTTCGGTATTAAAGGCTTTGGGACACAAGGAACCAAATTAATTGTCTAACATTTTTATACTCAGTTCAGCGTTCTAATTTTAGGGTGAAATTGTTCGACAAATCCTCGTTATTATTACATGCACTTGAGGAATCCTCTGTGTAACTGTAATTCAGACTGTATTAATGGTGGATGGTAGTCATACCTGAGATCTGCACACAAACCTCATAAATATGCAAAACGTACATCATTCTTTCATGTGAACATTTGAGTTGAGCGTGCAGATCTTACTGTAAGTCTGGATACAACCAGGTATGAAGTGATGAGGAGCTGAATGGACAGCACACAGGCATCCACCTGAATAACAGCAGTTATCACCACTTACTGAGTCACATTGACTCTCAGCACATATGTACTGTAAATAgtgtatttttaaaaaataaagcatATTTATGACTA

Function

GO: NA

KEGG:

id description
K22288 ANGPTL3; angiopoietin-like 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435965 lncRNA downstream 18016 33552883 ~ 33554094 (-) True G2130462
TU2435833 lncRNA downstream 121567 33440402 ~ 33450543 (-) True LOC110509034
TU2435904 lncRNA downstream 139057 33432755 ~ 33433053 (-) True G2130409
TU2435899 lncRNA downstream 145255 33426418 ~ 33426855 (-) True G2130404
TU2435893 lncRNA downstream 158747 33412968 ~ 33413363 (-) True G2130398
TU2435980 lncRNA upstream 1801 33577792 ~ 33578201 (-) True G2130476
TU2435990 lncRNA upstream 17723 33593714 ~ 33594568 (-) True G2130484
TU2436016 lncRNA upstream 55842 33631833 ~ 33632058 (-) True G2130506
TU2436018 lncRNA upstream 59572 33635563 ~ 33635926 (-) True G2130508
TU2436024 lncRNA upstream 73485 33649476 ~ 33649702 (-) True G2130514
LOC110508228 mRNA downstream 3507 33563935 ~ 33568603 (-) True LOC110508228
XM_021589979.2 mRNA downstream 9970 33555017 ~ 33562140 (-) True LOC110509037
XM_021589978.2 mRNA downstream 45413 33518704 ~ 33526697 (-) True LOC110509036
XM_036966732.1 mRNA downstream 57649 33406673 ~ 33514461 (-) False LOC110509034
trnav-cac-89 mRNA upstream 6569 33582560 ~ 33582632 (-) True trnav-cac-89
XM_036966528.1 mRNA upstream 50460 33626451 ~ 33797286 (-) True LOC110508229
XM_036966338.1 mRNA upstream 338359 33914350 ~ 33916205 (-) True LOC118944832
XM_021589988.2 mRNA upstream 377706 33953697 ~ 33972737 (-) False LOC110509043
XM_021589989.2 mRNA upstream 377706 33953697 ~ 33972737 (-) True LOC110509043
TU2435888 other downstream 173026 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1341896 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1407088 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 464215 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 465447 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 465578 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 468699 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 909878 34485869 ~ 34486176 (-) True G2131621

Expression Profile