RNA id: trnav-cac-89


Basic Information

Item Value
RNA id trnav-cac-89
length 73
RNA type mRNA
GC content 0.58
exon number 1
gene id trnav-cac-89
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33582560 ~ 33582632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttccgtagtgtagtggttatcacgttcgcctcacacgcgaaaggtccccggttcgagaccgggcggaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435980 lncRNA downstream 4359 33577792 ~ 33578201 (-) True G2130476
TU2435965 lncRNA downstream 28466 33552883 ~ 33554094 (-) True G2130462
TU2435833 lncRNA downstream 132017 33440402 ~ 33450543 (-) True LOC110509034
TU2435904 lncRNA downstream 149507 33432755 ~ 33433053 (-) True G2130409
TU2435899 lncRNA downstream 155705 33426418 ~ 33426855 (-) True G2130404
TU2435990 lncRNA upstream 11082 33593714 ~ 33594568 (-) True G2130484
TU2436016 lncRNA upstream 49201 33631833 ~ 33632058 (-) True G2130506
TU2436018 lncRNA upstream 52931 33635563 ~ 33635926 (-) True G2130508
TU2436024 lncRNA upstream 66844 33649476 ~ 33649702 (-) True G2130514
TU2436034 lncRNA upstream 74744 33657376 ~ 33657608 (-) True G2130519
XM_021589981.2 mRNA downstream 6569 33572110 ~ 33575991 (-) True LOC110509038
XM_021589980.2 mRNA downstream 6570 33572110 ~ 33575990 (-) False LOC110509038
LOC110508228 mRNA downstream 13957 33563935 ~ 33568603 (-) True LOC110508228
XM_021589979.2 mRNA downstream 20420 33555017 ~ 33562140 (-) True LOC110509037
XM_021589978.2 mRNA downstream 55863 33518704 ~ 33526697 (-) True LOC110509036
XM_036966528.1 mRNA upstream 43819 33626451 ~ 33797286 (-) True LOC110508229
XM_036966338.1 mRNA upstream 331718 33914350 ~ 33916205 (-) True LOC118944832
XM_021589988.2 mRNA upstream 371065 33953697 ~ 33972737 (-) False LOC110509043
XM_021589989.2 mRNA upstream 371065 33953697 ~ 33972737 (-) True LOC110509043
XM_036966941.1 mRNA upstream 394944 33977576 ~ 33985115 (-) False LOC110509045
TU2435888 other downstream 183476 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1352346 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1417538 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 457574 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 458806 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 458937 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 462058 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 903237 34485869 ~ 34486176 (-) True G2131621