RNA id: XM_036966528.1


Basic Information

Item Value
RNA id XM_036966528.1
length 5704
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC110508229
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33626451 ~ 33797286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTGTTATATATTGTTTTCATCTATAGACTCGGATACTGTAATAAGTTATTATATGCGTTGTTGGTCTATGCATCCTCATGCATTCCTGCCTATCCATCACGAGTGAAGAGCAAAAGTTAATTCTTAGTTTTGGGAATTCCCGACAGTGTTTTGACCTTTCTGTAGAACATTGTAAAaagtatagactacagtagactacacacatTCACGTCATCGGCAGTAAAGAATGGGGCGCGTTAATTAAAAAGACAGCTTTATTTTCTTGGCACAATCCCCGCCCATACACGCCGTCGTCACCGATTCAAATTGGCAGTGAGGCTGAGGCAAGGCAAGGGGGGTTTCGGCCGGTAAAGTAGGCTAACACCGTCGCAAGAAGAAGAACGGATTTTCGGACAGGCTTTGTTTGTGTATGAGCTCCATCACCTCCTCCAGAAATGTGGACGGATATAAGGAAACTACTGATCTTTCATTTGTTTGTCCTAAAACACTGCTCAAAAGgaACAGAGGCAGAAGAGTGTGAGGAAGGCCAGTTTCAGTGCAATAACAGAAGGTGTATACCGACCATATGGAGGTGCGATGACGATGACGACTGCTCAGACAACAGCGACGAGGAAAACTGTGCCAGGAAGACGTGTGCCCCAGCAGAGTTTGCCTGTGCTAACGGCCAGTGTGTACCAGGCCGCTGGCGCTGTGACGGGGAACCAGAGTGTCCCGACGGCTCGGATGAGGCAGACGCCACCTGCAGCAAGCAGACGTGTCCTTCGGAGAAGTTTGACTGCGGCGGCTCCACCAACAAGTGTGTCTCGTTGTCGTGGCGATGCGATGGCGAGCGGGACTGCGAGAACGGGTCGGACGAGGAGGACTGTGCCGCCGGAAACAAAGCCTGCCCGAAAAGCCAGTTCCAGTGTGCCAACCGCAAGTGCCTGGCACCTGTCTTCGTGTGTGACGGCGATGACGACTGCGGCGACGACTCTGACGAACTCAAATGCTCCGACCGCCACTCGCCGACGAACACCTGCAGCCCGCACGAGTTCCGCTGCAACACCTCGGAGTGCGTGCCCGTCGTGTGGAGCTGCGACGGCGACCCCGACTGCCCCGACGGCTCTGACGAGTGGCCGGAGCGTTGCGGCGGTGAAGGTTCACATCCACGCCGCAGGGTGAACTGTACGATGGAGGAGTTTCGGTGCAGCAACGGGGAGTGTGTGAGGCTGCCGTGGAAATGTGACGGCGATCCAGACTGCAAGGATAAGTCAGACGAGGCAGAATGTCcccTACTGACATGCAGGCCAGATGAGTTCCAGTGTGGGGATGGCTCCTGTATCCACGGCACCAAGCAGTGTAACAAGGtccatgactgtcctgatcagagTGATGAGGCCGGCTGTGTCAACGCCACTAAGTGCGAGGGACCCTTGAAGTTCCTGTGTAAGAACGGAGAGTGTATCGACAGCGCCAAGGTGTGTGACAACGTCAAGGACTGCAAGGACCGCTCTGATGAGCCCAAGAAGGAGTGTGgGCTCAACGAGTGCTCACTCAACAACGGCGGCTGTTCTCATATCTGCCAGGATCGACCAATAGGCTACGAGTGCCAGTGTCCCACCGGGTACAAGCTACTGGACAAGAGGACGTGTGGAGaCATTGATGAGTGTGAGAACCCCAACGCCTGCAGCCAGATCTGCATCAACTACAAGGGAGACTTCAAGTGTGAATGTTACCAAGGCTATGAGATGGACCCCGTCACCAAGACCTGTAAAGCAGAagGGAAGTCTCCTTACCTGCTGTTCACCAACCGTCAGGAGATCCGTCGTGTAGACCCGGTGAAGAGGGACTACCGCCAGGTGCTTGCCACCCAGAAGAATGCTGTGGCGCTGGACGTAGACGTGGCTAATAACCGTCTGTTCTGGTGCGACCGCTTCCACCGTAACATCTACAGTGCTCTGATCCCAGAGGCGGGCGACCCGTCCCAGCAGGTGACCCTGGTGGActctggctctctcctctcccctgagggCCTGGCCCTGGACTGGGTCCAACACAACCTCTACTGGACCGACTCGGGCCACAAGACCGTCTCGGTGGCCTCGGCCTACGACGGCCTCAAGAGGAGGGTCCTGGTCGACACGGAGCTCAGCGAGCCCAGAGCCATAGCGCTGGATCCACAGCATGGGTTCATGTACTGGACTGACTGGGGCACCCGGGCCAAGATAGAGAAGGCAGGGATGAACGGGGTGGACCGACAAGTCCTGGTGTCAGACAACATTGAGTGGCCCAACGGCATCACCCTGGacgtAGCCAACAGGCGTCTTTACTGGGTCGACTCCAAGCTGCACCTGATCTCCAGTGTGGACTTGAACGGGGCTCATCGCAGGACACACCTGTCCTCCTCAGAGAGACTGGGACACCCCTACGCACTGGCCGTgttcgagGACCGTATCTACTGGACAGACCGGGAGAGAGAGGCGGTGTACAGCGCTAACAGGCTAACGGGCCAGGACATCAGCACAGTGGCCGAGCACCTCAAAGACCCTCACGACATAGTGGTCTTCCACCCGCTCCGCCAGCAACCAGGCCCAGACAGCTGTAACCTGGGCAGTGAGGACAACGGTGGCTGTGAGTACCTGTGTCTCAAAGCCCCCCAGATCACAGAGCACTCCCCCAAATACACCTGCGCCTGCCCCACAGGACAGGACCTGGGCCCCGAAATGCGTGCCTGCATGCCAGCAAATGAGACCACTACCACATCATCGCCTGTGGCCATCACCACGGCCGCCAACGACAAGGTCTCCCCTCGCACTTCTGGGTCGTCCCAGGCAGACGCCGGGGTGCCCCACCTCCTCCCAGCCCCCTCCAGCACCCCCGAGCCCCCCCCTAGCTCAAAACCTGGGGTGGAGGAGAAGGAAGGCCGTGGTTTGGATCCCACTGCTGACACCAACATCCTGGTCACCTCCACCACAGTAGGCTTCGTCGTCAAGgaggacagcaacctctcccaccactCTGGAAGTGAGCATTTCCTCCTGGGTGAGAACCTGACAGTGGCAGTTCTGGGAGTAGTGATCCCCATAGTTCCTATTGTTGCCACAGTGATCTTCGGCCTGCTCTGCACCGGCGTCTACCTGGTTTGGCGGAACTATCGCCAGAACGCCACCAAGAGCATGAATTTCGACAACCCTGTCTACCGCAAGACCACGGGCGAGGGCGAGGAGGACGAGATTCACATCGGCCGGACGGATGGCATCATGGGCGGCCACCACGGGCACCACCCGTACCCGGCCGGAGTGGGGTGTGGCGTAGTCGGCGGGGGCGGAAATACATGCCCACAGTTCATTGCGCTGCCACTAGGTGGCAGTATGCCTGATCCGGGGACTCATTGGTACACGGAGCAGCCTATGCTGTCTACTACGGCGAAATGAGTATGGATACAAGACAAGATGGCCGCTCAGGAGGTTAATTTTCAAGATGGCCGCCGctcaggcacacgcacacacagtactGAGGTTACAGGTCACTCAAGCTGACTGACTTGTTGAATGGATGGACATATGATGTTATGATATCATCACATCCAGCCATTAAAGTCCATGATGTGCCAGTTCATTACACAGGATCGACAGTTTTACACTTTCTACGTTTTTAAATGTGATGTCAGAGTTTGGGTGGGTTCCAATTGAATTCCTATCAATTTAGAAAATTGATAAGAATTCAGTTCATGAATTCTCTACGTATCAATTGAATTTAGATACATTTCCTCACTGGACTTGAAAAGGAGTCAACTCCAATTCTGTATGTTTTTCATCCACTTTTGATCAATCTAAGCAGTATTGAGCTGTGTTATATGTCTCACGTTTAAGGGCGAGAGGAGTTACAAAATATTATTTTAATCCTTGACGTTTTAAATTTAGGCTCTCCATTTTATTTCCCTGGTGGAACCTCAATTTTCTGGAGAGACTTTTTAGGAGGAGGTTTAAACCACGGCAGCACCTTAGTAGATGGGACAATCTGTACGGTTTTAAGATATTCATTTAACATGTTTTATTGCTCACCTCATTATTACTAAAGATGTCATAGTGTTTAGTTATTCTGGTCGGGGCATTTGTCTTGGAGTGGAGTGAAAGGtttaagagagagtgtgtgggcttgtgtgtgagtgtgagtttgCTTGTGTggatttacgtgtgtgtgtgtaaacctgtGTGTGTACTTTCTCTCGCCATTGGAGAGGAGTTTTCAAAGCATCCTTGTTGATATCCTGTGAAGTACAGTTGAGCCGTGGCAGAAACCTCTTTGATGTTTTCTTTATTGAACCACAAAGGCTATCAGAAGGCAAGCAGGGAATAGGAGGGTCAAGGAGAGATTTTGGTGGAATCCAAGAAAAAACTGAAGGCTTAGCGAGAGAAGCCTTTGTAGTTATTAAGGTTGGCCTGGATTTATAGACCCAGTGAAAATACGTCTAATTACAAGCTAATGGCCAAGGGTATCTGTGTTGGGCAGGATAATGACAACAGAGTTGGCTGAAGCAGAAATAGCCAGCTTTCTGGCTAGCATGCTGATTATCAAGGCTAAAGCAGAAATAACTAGCTTTCTGGCTAGCATGCTGTTTATCAAGGCTAAAGCGGAAATAACTAGCTTTCTGGCTAGCATGCTGTTTATCAAGGCTATAGCAAAAATAACTAGCTTTCTGGCTAGCATGCTGTTTATCAAGGCTAAAGCAGAAATAACTAGCTTTCTGGCTAGCATGCTGTTTATCAAGGCTATAGCAGAAATAACTAGCTTCCTGGCTAGCATGCTGTTTATCAAGGCTAAAGCAGAAATAACTAGCTTTCTGGCTAGCAGGCTGTTTATGAAGGCTAAAGCAGAAATAGCTAGCTTTCTGGCTAACAGGCTGTTTATCAAGGTTAAAGCAGAAATAGCTAGCTTTCTGGGTAGCAGGCTGTTTATAAAGGCTAAAGCAGAAATAGCTAGCTTTCTGGCTAACAGGCTGTTTATCAAGGTTAAAGCCGAAATAGCTAGCTTTCTGGGTAACAGGCTAATGTGTATCTAGGCTAAACCAGAAATGGCTATTGGCTACCAGGCTAATTGTTAGCTATTATTCTTCTCTCCTTTTTAGCTGTTTTCCATGGCCATAGGGTATGTGGTTGGTACATGTGTCATCTGTTTTTGGTGATTTTATTCTCCCATCTGCTCTCTTTGTCAGTaaactcatacacacacagtcactcacccTCGATAGATCACACAAAGGCATGCATATTCACTCACCCTTCACAAGCACTCCACAATGCCCCTGTCCTCGTTCTTTGAGCAGATGTCATTGTGAGCTTTCATACAGGAGGGCAATAGTAGGAGGTCTCTCATACAGGAGGAACTCAGTAGGAGGTCTATCATACAGGAGGAACTCAGTAGGAGGTCTACCTATCATACAGGAGGATCTCAGTAGAAGGTCTAACATACTGGAGGATCTCAGTAAaaagtcaaaagtagtgtataggcactatatagggaatagggtgacagtTGGTTTGCAGTTCTCAACAGTAATGAGGTTCGGTCAGGTTGGATCCTCCGGTCAGTATACACGGCCCTCCTTTGTCCCCCTCTCATTTGTCCCCCTCTCTTTTATCCCCCTCTCATTTGTCCCCCTCTCTTTTATCCCCCTCTCATTTGTCCCCCTCTCTTTTATCCCCCTCTCTTTTATCCCCCTC

Function

GO: NA

KEGG:

id description
K20052 LRP8, APOER2; low-density lipoprotein receptor-related protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435990 lncRNA downstream 31883 33593714 ~ 33594568 (-) True G2130484
TU2435980 lncRNA downstream 48250 33577792 ~ 33578201 (-) True G2130476
TU2435965 lncRNA downstream 72357 33552883 ~ 33554094 (-) True G2130462
TU2435833 lncRNA downstream 175908 33440402 ~ 33450543 (-) True LOC110509034
TU2435904 lncRNA downstream 193398 33432755 ~ 33433053 (-) True G2130409
TU2436183 lncRNA upstream 52572 33849858 ~ 33850287 (-) True G2130642
TU2436356 lncRNA upstream 76906 33874192 ~ 33874500 (-) True G2130787
TU2436358 lncRNA upstream 78473 33875759 ~ 33876007 (-) True G2130789
TU2436374 lncRNA upstream 108788 33906074 ~ 33906720 (-) True G2130805
TU2436375 lncRNA upstream 109954 33907240 ~ 33907582 (-) True G2130806
trnav-cac-89 mRNA downstream 43819 33582560 ~ 33582632 (-) True trnav-cac-89
XM_021589981.2 mRNA downstream 50460 33572110 ~ 33575991 (-) True LOC110509038
XM_021589980.2 mRNA downstream 50461 33572110 ~ 33575990 (-) False LOC110509038
LOC110508228 mRNA downstream 57848 33563935 ~ 33568603 (-) True LOC110508228
XM_021589979.2 mRNA downstream 64311 33555017 ~ 33562140 (-) True LOC110509037
XM_036966338.1 mRNA upstream 117064 33914350 ~ 33916205 (-) True LOC118944832
XM_021589988.2 mRNA upstream 156411 33953697 ~ 33972737 (-) False LOC110509043
XM_021589989.2 mRNA upstream 156411 33953697 ~ 33972737 (-) True LOC110509043
XM_036966941.1 mRNA upstream 180290 33977576 ~ 33985115 (-) False LOC110509045
XM_021589991.2 mRNA upstream 180290 33977576 ~ 33990790 (-) True LOC110509045
TU2435888 other downstream 227367 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1396237 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1461429 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 242920 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 244152 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 244283 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 247404 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 688583 34485869 ~ 34486176 (-) True G2131621

Expression Profile