RNA id: TCONS_00055462


Basic Information

Item Value
RNA id TCONS_00055462
length 2542
RNA type mRNA
GC content 0.44
exon number 12
gene id XLOC_028596
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12401146 ~ 12477278 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCAGATGTGACGGTACGTTTGTGACAACCAATCACAGCGCAGAAAAACCCGGAACTTCTGAAGGCGCAAGAAAGAGCGCCTGTATTCAATTTGAAAAGAAGGAAAACATCAGGTAGTAACATACTGATCTGGAGTCATGAGTTTCTCTCCGAGTCCACTGAGCCCGATGAGCGGCCGCAGTATTCAGGAGCAGAGAGAGCGCTGGGAGAGGAAGAGGAGTCGCACGGCCCGAGAGATGATCCAGAGTGAGCAGAGATACTGTCAACAGCTGGAACTGGTGGTCACGTACTTTGTGGAGATCTTGAAGGCCAAAGGAACCCTCAGGCAGGACATTAGAGAAAGCATCTTCAGTTCAATTAAATCCATTCATTTAATAAACCAGACACTACTTGCTCATCTAGAAATGGGGAGGTTTGGCATTGGTTTCGAGGAGTTCTGCACTCATCTGCAGTTGTACAACACATACATTGACAACATCCAAACGGCTAAGAAGGTCCTCATGGTTCAGGTGAAGAAAAGCAAAGCCTTCAGACGCTTTAAGAAGCTCCAGGAGTCGAGGCCTGAGTTCAGTCAGCAGAAGCTGGAGGATCTGCTTGAGCTTCCTCTTCAGCGCATACAGCAGTACAAGCATTTCTTGAGGGACTTGACAGAGAACACCGGTCCAGACAACCCGGAGTTTCAGCAGCTTTCAAAGGCAGTGAAGGCCATCTCAGAGGTCGCCCAGCGGATCCAGGACAACGCTCGCAGCCATGAGAACCACCTGCAGCTGCGCAGAGTCCAGAAACAGCTGAAGGGCCGAAAGACCAGAATCCTGACTCCAGGGAGGTGGTACATTCGGGAAGGCTGGCTTAAGACAGTGCCCCCTAAAGGCACGGAGGCAAAGCCCAAGATGTTTTACCTCTTCTCTGACATCCTGCTTCAGGCCAAACCATGCAGTCCTATGCATCCTACCAATGGGGATAAGTTTACCTGCCAGCGAGTCTACCCTTTGAAGGAGTGCACAGTGGACAAAGTTTTTGGACACACCAAGAGCCAGGGAGGCCTTATTAGTTTGACCTTCGCCAGGGCCAAGCTGCTCTTAATGTCTGACGATCAAGTGGACATTAACGATTGGTATCGTAGTCTCTGCTTGACGATTGGGCAGTTGAAGTCCAGGAATACAGTGGTTCACAGGAGAGATGAGCTGTGCAGGACACCCATCAGATCAGACGCAGATGACCAGAGCTCAACAGAGAGCCAGAACACACGAGGAACTAAAAGAGCCATGATGTTGGATGATGAAGTGAGGGAGGAGAGCAGCAGATCACTGTCTTCAACAGAGGAGAGCAGCCGCAGCGCCACCAAGAGGAGAAAACCTGATCAAACTCCTGCTGACGGATCGCAGGAGTCATCAGGATCGAGCTGTGTGATACTGTGAAGAGCTGAAGATCTGCTGAAGACGGAGGATTGAAGGTGATTTAGGCTGAATGTAAAGCAATGCACATCTACCTACACACTGCTGAGTTGTGCTCTGTATGCCAAAAAAAAAGATTCCACAATGCAGGGTTATTGCTTTTAAGCATATTTACTGTTGACGTTTTAAAAACCTGTATACTGAGATGTCTTTATTTTAAGCGTAGTCTGATGCACAATAGCAAAAACCTAACAAGAATGCATCATGTAGGCTATAGTAACTGAATATGTATCCAGTCACTACTCTTACATATTTTTATGAGTATATTTTATGCCATTAATGTTTATTATCCcatttttaatatgaaataatgTGGTGCAATAAGACTATTTGATATGCATGTGATTTTAATCGCTTACACACTGGAGAAAAAGGGAGAAGCTGCTTTTAAGCGGTGTGTGTTGAATATCGCATTAATTTTGATCATACTCTAATGCAAAACGTATACATTTGCTTGTGTTGGCTTGTCTTAATCAAGCATTTACTGTCGGATCTGTTTAATTTCTTACTGAACTCTGTTACACTGGTCATTATTATATTTTGCTTGTGAATGAACAATAAAAGCTCAGTGATTTGCTCTACGTGTTGACAAGCGATTTAATGAACCAAAAACTGCAGCAATTTTAGCTGGCCAGCACTGCCCTCTACTGGAGAACTGCTGATTCCAGCATGCATTTAACCCTTTGAGAGGAATTCAattcatttcatctttatttcaatagtagttttacaatgtagattgtgtcaaagcagtttaacagagacattcttgtaaattgaaatttaaactgtgtcagtccagttttcagtgttgaagttcagttcattgtggtttaattttcactgctgaaagtccaaacactgaagagcaaatccatcgatgcacagctctacaagtcACAGCAAACCATCATTGCCATCATTGACGTTTTGTCCATAGTTTGTCATTAAAACAAAAGACTCAAAATTTGCTTCAGATGGTGTCAGGGACACAAGTTAATCAACAACGCTGGTCAAAAAACCTAAAAGGTTAATTGTTTATTCATGCTAAGTTGAGTTCAAACCTATTCAAGTGTAACATTAAAAG

Function

GO:

id name namespace
GO:0030335 positive regulation of cell migration biological_process
GO:0005886 plasma membrane cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-041114-28 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in positive regulation of cell migration. Predicted to be active in plasma membrane. Orthologous to human ARHGEF39 (Rho guanine nucleotide exchange factor 39).

Ensembl:

ensembl_id ENSDART00000127150

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055459 lncRNA downstream 89536 12321818 ~ 12323159 (-) True XLOC_028594
TCONS_00058124 lncRNA downstream 115245 12288765 ~ 12297450 (-) True XLOC_028593
TCONS_00058123 lncRNA downstream 122152 12288765 ~ 12290543 (-) False XLOC_028593
TCONS_00058122 lncRNA downstream 122374 12288765 ~ 12290321 (-) False XLOC_028593
TCONS_00057331 lncRNA downstream 171122 12240134 ~ 12241573 (-) True XLOC_028591
TCONS_00055467 lncRNA upstream 238644 12715922 ~ 12717752 (-) False XLOC_028598
TCONS_00057332 lncRNA upstream 264084 12741362 ~ 12742600 (-) False XLOC_028600
TCONS_00058125 lncRNA upstream 264123 12741401 ~ 12744353 (-) True XLOC_028600
TCONS_00055482 lncRNA upstream 316457 12793735 ~ 12794182 (-) True XLOC_028603
TCONS_00055485 lncRNA upstream 396704 12873982 ~ 12883327 (-) False XLOC_028605
TCONS_00055460 mRNA downstream 24160 12381735 ~ 12388535 (-) True XLOC_028595
TCONS_00055458 mRNA downstream 89467 12317461 ~ 12323228 (-) False XLOC_028594
TCONS_00055456 mRNA downstream 126628 12243698 ~ 12286067 (-) False XLOC_028592
TCONS_00055451 mRNA downstream 306656 12102267 ~ 12106039 (-) False XLOC_028588
TCONS_00055466 mRNA upstream 238417 12715695 ~ 12718367 (-) False XLOC_028598
TCONS_00055468 mRNA upstream 238949 12716227 ~ 12718103 (-) True XLOC_028598
TCONS_00055469 mRNA upstream 241687 12718965 ~ 12725513 (-) False XLOC_028599
TCONS_00055470 mRNA upstream 241689 12718967 ~ 12723585 (-) True XLOC_028599
TCONS_00055471 mRNA upstream 277858 12755136 ~ 12766418 (-) True XLOC_028601
TCONS_00055457 other downstream 126629 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055433 other downstream 804412 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 805840 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055389 other downstream 1751018 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 3824787 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055465 other upstream 118402 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055473 other upstream 300431 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 429703 12906981 ~ 12914170 (-) True XLOC_028606
TCONS_00055495 other upstream 497938 12975216 ~ 12978899 (-) True XLOC_028608
TCONS_00055502 other upstream 730833 13208111 ~ 13255813 (-) True XLOC_028612

Expression Profile

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