RNA id: XM_021589991.2


Basic Information

Item Value
RNA id XM_021589991.2
length 2549
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC110509045
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33977576 ~ 33990790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCAGGCTAATAGAGTTGAGGCAAAGCGgtatttaaagttttttttttgttggttaaggCCGTTAGTTAGCCGTTAGCTGCTGACACAGGACAGGGGTGTGGCTGATTGGCTGGTCACCACTTATCAGAGGTGTCAAGCTAGGCTGCTATACCAAGGCCCTGAGGAATCCATCAGCATCATATTCTGTGAACTCCTGACCTGAAGATACAGTGTAGCTTTAAGGTTTTTTATTTCGTTTAACTTCTCGTTCTGTCTACTCTGTTGGGACAAGTCAGTCACAAGCTGTTCTCATTGGCAGGAACTTGAAGAGAGGCAGTTTCCTAGAGGTCATAGGTCAGGCCATGACCCCGAGGGAGCAGCTGAGAAAGATGTCAGCGATGGGGGAGCAGGGGGCTCTGGATGAGAAACACTGGTACCGCCTGGTCAATGGCATGTCTGCTGGAGAGCTACGTCAGCGGCAGGAGATGATGATGAGAAACCAGATGACCATGACTCCTCAGATCCTGGCCCAGGGACAGCAGAGGCTACAGGGGGTGCCCACCCAGTTTGAGCCCCGCTTCATGGAAAGAGAGCTAGCTCCTCCCTCTGAGATGGTATCTTCTGAGGTCAGGCAGATGCACATGGGGGGTCACCTCGGTCCGCCCATGCCCCCACACCCTGGTATACCTGGCAGGGGCTTCCCTGGAGCTGGCTATAGCTTCATGCCCTCAGAGCCCATGGAGACAGTTGCCCGGCGACAGGAGCTCATCCACAAGCAGAACATCGCCAGGATGGAGATGAATGCCATCCTCCATCAGAAGGAGATGGAGAACGCGCATCAGAAGGGTCTGATGGGTATGGAGGCGCCCATGATGTACCAGTCCAATGCCATGGCGTTCCGAGGGCGCCAACGCCTCCCAGACGGCCACGACGTCTTCGTCCACCGCACCACCCTGGAGGAAATGCAGGCCAACAGCCTCCTGATGTCCTCCAGCCCCTATCCACCAATCAGCACGCTGCAGAGGGAGAGGAGCCGCAGGGTCGGTCGCAGGGCAACTAATCACAAGAGCACAGAGAGCCACGCGTCGGGCCCGAAGGGCCAATCGGAAGACAAGAGCGTGGAGCAGAGTCCCGGCGGTGCctcgggagaggagaaagaggcgGAGGGGAAAATGGACATGGGAGGGGAGGCGGCCAGCAAACAACATCAAACCAAAATGGACGCACAGCTCTCGGCGGGCAGCAGGAAGAGCTacaaggaggaggagcagggccTGCGCAAGGCCTGCATAAACAGTCAAGATGGCTGCCCTGACGTTACCAACTGCAACAGTGGCGCCAGCGACAAAGACATGCCTGGCCAATGCTCTGCGTTCCAGTATCCCTCCGCCAGTGGGCCTATCCCAGGCATGCCTTACATGTTCCCTCATGGGCACCCCAATCTCTTTCTCAACGGAGAAGATATGTCCTCTATCCAAGACCTCAGGAAGTGGACAGTGGACGACGTGTACAACTTCATCAACAACATACCCAGCTGCTCTGAATATGCTCAGACTTTCAAGGACCACGTGATAGATGGGGAAACGTTGCCGCTCCTGACAGAAGACCATCTACTGGACACCATGGGACTGAAGCTGGGCCCTGCACTCAAGATACGATCACAGGTGTCTCGACGGCTAGGCAGCATGTTTTATATGATGAACCTCCCGCTCGCCGCCGCCGCCGCTCTGCAGGCCGCCCCTGAGAAGGCAGGAGGAGGCCGATCGTCAGAGATCAGCTCCCCTGTTAACTGTAACAGTGTGGAGATGATGGGCAGCCCGTGCACCAGAGACCCAGAGGGCCTGAAACCAACCGACTCCCTCCCAGAGATTGACAACCCCTCTCCCCCTTCGGCCAGCAGTGGAACTGCCTGAGGCATCAGTGTGTGGGAGAAGAGTCGTCAGCCAGTGGTTCAGATCCAAGTCGACCACTAGCCCCTACCACATACATATAGACACATACCCTCTAAGGACTTCATGTAGATTTTTAAGCATTGGATGGGTATAAGTGATATAGTAACAGCTGCATCTTGCCCTCTGATTGGCTAGATGGAATTGTTGCTGTGTTGGATACACCTGTCCAACTTTCAGAAGTGCACAGGGAGTAGGAAATAGGGTTCAAATAGGAATTCAGCAAGTGTTTCAGCCCAAAGAGCTGCTTGTAAGCTGCTAACCATTTCCGTCAGGCAATGGTGTTCAGTTTTCTAGTGTGTGCCCTGCAGTGTTTAAACTGCTAGGTGTATGATGGCATTTTTGTATGTATTTAGTTACAGTTGAAATGTTTGGTACTTTTTTTCCACCATGTTTCAGATTCAAGATGGAGGCATTAAACCCCAAGCCATTAGAAATATAGATGGCTTGATGAAGAATGGGAAGAACACTGAATATACACGTGACCTCTGTGTTTGGGGGGAAAATAAACTGTATTATGTAAATATTAATGCATTTATTGTGTTTTTGTAGCATAATGCTTTCCAATGAATATGTGTGATATTATCAGTTTTAATGAATATAAATGATTGATTTTAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2436375 lncRNA downstream 69994 33907240 ~ 33907582 (-) True G2130806
TU2436374 lncRNA downstream 70856 33906074 ~ 33906720 (-) True G2130805
TU2436358 lncRNA downstream 101569 33875759 ~ 33876007 (-) True G2130789
TU2436356 lncRNA downstream 103076 33874192 ~ 33874500 (-) True G2130787
TU2436183 lncRNA downstream 127289 33849858 ~ 33850287 (-) True G2130642
TU2436419 lncRNA upstream 15816 34006606 ~ 34006952 (-) True G2130847
TU2436424 lncRNA upstream 24034 34014824 ~ 34015681 (-) True G2130852
TU2436426 lncRNA upstream 25508 34016298 ~ 34016990 (-) True G2130854
TU2436427 lncRNA upstream 28405 34019195 ~ 34019432 (-) True G2130855
TU2436428 lncRNA upstream 29259 34020049 ~ 34020266 (-) True G2130856
XM_021589988.2 mRNA downstream 4839 33953697 ~ 33972737 (-) False LOC110509043
XM_021589989.2 mRNA downstream 4839 33953697 ~ 33972737 (-) True LOC110509043
XM_036966338.1 mRNA downstream 61371 33914350 ~ 33916205 (-) True LOC118944832
XM_036966528.1 mRNA downstream 180290 33626451 ~ 33797286 (-) True LOC110508229
trnav-cac-89 mRNA downstream 394944 33582560 ~ 33582632 (-) True trnav-cac-89
XR_005040258.1 mRNA upstream 6301 33997091 ~ 33998016 (-) False LOC110509046
XM_021589993.2 mRNA upstream 6301 33997091 ~ 34000856 (-) True LOC110509046
XM_021589999.2 mRNA upstream 47998 34038788 ~ 34058344 (-) False LOC110509052
XM_036966608.1 mRNA upstream 47998 34038788 ~ 34058344 (-) False LOC110509052
XM_036966339.1 mRNA upstream 74749 34065539 ~ 34075144 (-) True LOC110509051
TU2435888 other downstream 578492 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1747362 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1812554 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 49416 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 50648 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 50779 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 53900 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 495079 34485869 ~ 34486176 (-) True G2131621

Expression Profile