RNA id: XR_005040258.1



Basic Information


Item Value
RNA id XR_005040258.1
length 640
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110509046
representative False

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33997091 ~ 34000856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGCTGCCATTGAAGGTGATGGTCAGTCAGAGTAGCAGCTGGTAAGCTGTAAGGCTGCTTGGTTTGTTTCGGTGGTCATGAGACCTttcgtttgtttttgtctttaGTTTGGGGCCTTTTTGTATTTTTCCTTTTTGTACATATTCATGTTTCGTCATCAtctaaacaaatgatagtctacTTGGATGACCAAGAGGAAAGACTGAGCTGGCCCTGGACCAAGACTCTCCCCCCGGCAACTACTGGGTTCTGTCCACTGACTACGAGGGCCACTCCGTGGTCTACGGCTGCACCGACATCCTGGGCACCTTCCATGCTGACTTTGCCTGGATCCTGAGCAGAGAGTCCACCCTGTCTGAGGAGAAACTGGAGGAGCTGTACCACGTGTTCACCTCCAATGGCATCGACATCGACGTGATGACCGTCACCAACCAGAGCCCAGAGCTGTGCGCCGACATGCCTCTGTGGGCCTAAGAGACCTGATTTCAGTCTACAACATACGTATGGTTTGCATTCATAGCATGGCTTGCACATAGACTGCTGTACAATGTCCAATGGTTGATACCTGCATGGTTGTCTTGTGTTTGGTCTGTTTATGTTAACTTGTGAGGAAATGCAATAAAATGATACTAGAAACATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2436375 lncRNA downstream 89509 33907240 ~ 33907582 (-) True G2130806
TU2436374 lncRNA downstream 90371 33906074 ~ 33906720 (-) True G2130805
TU2436358 lncRNA downstream 121084 33875759 ~ 33876007 (-) True G2130789
TU2436356 lncRNA downstream 122591 33874192 ~ 33874500 (-) True G2130787
TU2436183 lncRNA downstream 146804 33849858 ~ 33850287 (-) True G2130642
TU2436419 lncRNA upstream 8590 34006606 ~ 34006952 (-) True G2130847
TU2436424 lncRNA upstream 16808 34014824 ~ 34015681 (-) True G2130852
TU2436426 lncRNA upstream 18282 34016298 ~ 34016990 (-) True G2130854
TU2436427 lncRNA upstream 21179 34019195 ~ 34019432 (-) True G2130855
TU2436428 lncRNA upstream 22033 34020049 ~ 34020266 (-) True G2130856
XM_021589991.2 mRNA downstream 6301 33977576 ~ 33990790 (-) True LOC110509045
XM_036966941.1 mRNA downstream 11976 33977576 ~ 33985115 (-) False LOC110509045
XM_021589988.2 mRNA downstream 24354 33953697 ~ 33972737 (-) False LOC110509043
XM_021589989.2 mRNA downstream 24354 33953697 ~ 33972737 (-) True LOC110509043
XM_036966338.1 mRNA downstream 80886 33914350 ~ 33916205 (-) True LOC118944832
XM_021589999.2 mRNA upstream 40772 34038788 ~ 34058344 (-) False LOC110509052
XM_036966608.1 mRNA upstream 40772 34038788 ~ 34058344 (-) False LOC110509052
XM_036966339.1 mRNA upstream 67523 34065539 ~ 34075144 (-) True LOC110509051
XR_005040274.1 mRNA upstream 249929 34247945 ~ 34250438 (-) False LOC118944872
XR_005040273.1 mRNA upstream 249935 34247951 ~ 34250438 (-) True LOC118944872
TU2435888 other downstream 598007 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1766877 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1832069 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 42190 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 43422 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 43553 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 46674 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 487853 34485869 ~ 34486176 (-) True G2131621

Expression Profile