RNA id: XM_021589999.2


Basic Information

Item Value
RNA id XM_021589999.2
length 5214
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110509052
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34038788 ~ 34058344 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTCCACAAAATGAATTGTCATTTTAACACGTAGGAAGCTGCAACTTTCACTTTCACATTTATCTGTCACAGTGCAGACATTTTAACGATGAAATGGCGGACTCTGCATCATTCAGAGACGAAGTCTCGGATCCATGGGCCCAGAGACGCAAAAGTGTGGATTTATTGCCCCCAAGAATGTCTGAAAGTCCTACAGAGATAAGGATTGTGCTGCTCGGCAAGAATGGCTCTGAGAAGAGTGTTGTTGGGAACTTCATCCTGGGCACGGGGGCATTTGATCCCATCTATGAACAAAGTCGCTGTGTGAGAGTCGGGGGTCAGGTGGAGGGAAAACACATAGCTGTGATCAACACTCCAGACCTGTTTGACCCTCACATCTCACATGACAAACTCTCAGAGGAACTGCGTTGGTGTGTCACTCTGTCTGACCCGGGACCTCATGTGTTCCTGTTGGTGCTGCAGCCTGAGGAGTTCACACAGGAAGAGGGAGACAGAATCAGGAAGATCCTAGACACCCTCAGTGACCGGTCCTTTGACTACTCAATGGTACTGACAACTCATGAAGACAAGAGGGGACACATGGCTGAGGATCACCCTCTGAATCAGATGGTCAGAGCCTGTAGAGGGAGGCAGCACCTCATGCACCTCCGCGACCACACTCAATTTATGGCAGATGTTGACAAGATTGTAAAGGAGAATGGAGGAGGCTATCTCACCTGTGATGTATTTGAAGATGCTACAAGTGACATGGTACAAGGGAAAGAGGAAATCCACAGGAGTAAAACTGATGGAAGTCTCAAATCTTCCTCTGAGGAAGAACTTGGAAAGGATGTTTTGGAACAAGGTGAATCAGCACAATTACACAATTGGGAGAAAGTAAAAAAAATTGGATTGACGTTGCTTAAGCAAACACGGAGTGGAGAAAAATGTGTGTCTCCACTCAGGATAGTGCTTCTGGGGAGGAGTGACGACAAGAAGAAAACAGTGGGTAACATGATCCTACAGCAAAGGGCTTTTCCAGGAATAGGCCTCTCTGCTGGTTTGTTTACCAAAATACAGCAATGTGAGTCAGCCAGTGGGAAGGTGAATGGCAAGTCTGTTACTGTTGTAAAGACTCCAGACTTCTTTGCTCTGCCTGTGGAGTCCCTGAtgcaggagatggagagatgtaaGACCCTCTCTGCTCCTGGGCCTCATGGGGTCCTGCTGGTGTTGAAGCCTGAGGAGttcacagaggagaacagaaacaCATTCAAGTTGATCCTGAGCATATTTGGTAAAGAGGCCTTCAAGTACTCAATGGTGATCATTACTCACGAGGGAGTCACAGGAAATCCTCATCTGAGACAAATGATTGAAGAATGTGGAGGAAGGCATCATGAAATGTACAAACAAGGAAGTGACCACAAAAAGTTAACTCAAAAGATAGAAAAGATGGTAGAGGAGAATGAATGGAGATACCTCACCTCCAATGAAGAGACGACACATGATACCATGACACCAAAGGCTCAGAGACTGAACGTGGTGCTGTGTGGCAGAGGAGGAGCTGGGAAGACTTCTATAGCCAATGTCATACTGGGTCAGACAGAGTCCAGTCCAAAGTCCAGCTCCTCCTCAGTGTGtgtgaagagagaaggagaggtgtgtGGTCGGCCGGTCACCCTCATCGAGCTGCCTGCTCTGTATGGAACACATCTCACTCAGGAGGAAGTGATGCGTGAGACTttccactgtgtctctctctgtgactctggAGTCCATGCTTTCCTCATGGTCGTACCTTTGGGTCCAATTACTGATGAAGACAAAGGAGAGCTGGAGACCATCCAGAAGATTCTCAGCTCACGAGTCAATGACTTTGTCATGGTCCTGTTTAGACAGGATAACATTCCAGTTGATAAAACTGCAGTTGACTTTGTGGAACAAAATGCAGACACAAAGCAACTGATCAAGATATGCGGAGGGCGGTTTAAAATCTTTGATGCTTCAAAGATTGAGAACACTAAGCAGACGACAGAACTTGTAACAGAAATAGTCAAAATGATGGATCAGAACAGAACCTGCTACACTCTGTACATGTACATGGAGGCTAAACACCAATCAGAACTGGACCAAAACAGAAGAATCAAGGATTTAGAGGAGAGAATCAGGAACATGTCACAAGGTGCTGAAATGGAGTGTTCCAGCACAGAGTGCATAAGGGTGGTGCTGATTGGGAAAACTGGCAATGGGAAGAGCTCCTCTGCAAACACTATCCTGGGCAGAGATGAATTTAAGTCTAAATCCAGCACTGATTCTGTGACAACAGTTTGTAAGAAGGCAGTCGGCAAAGTTGATGGAAGAACAGTTTCTGTGGTGGACACACCTGGTCTTTTTGACACAACATTGTCTAATAAAGATGTTCAGAAAGAGATAGTGAAATGTGTTTCCCTGTCAGCTCCTGGACCCcatgtgtttatcatagtgttgACTATCGGGAGAATCACGAAAGAGGAGCTAGACACTTTGGACCTCATAGAGAAAACCTTTGGTCCACGGGCAGGAATGTTCTGCTTAGTTCTGTCTACTAGAGGAGGTGACTTGAAAAATGAATCAATTCAAGATTACATTGGGGAAAGCAAGATTGCCAAACTGCATAAACTGATCAGAGATTGTGGAGACAGATTCCatgtcttcaacaacaacaacgatAATAACTGCACACAGGTCACTGAGCTGATTAAGAAGATGAACAAAATGGTGTCCATGAACAAGGGCAGTTTCTACACCAATGAGATGTTCCAGGAGGCAGAGGCAGCCATTAAACAAAAACAGGAAGCAatactgaaggagagagaggcggagataAAGGCTGCCATGGAGAAACTGAAGGTCGGACATGAATCAGACATGGAAAAGATGAAGTCAAAGTTGGAAGAGGAGAGATTGAAAGTTCAGCGGGAAAGACAGCTGAGAGAAaacatgttgagagagagagaagaagctaTTAGAAAAGAGCATGAAGACAAGGAGAAAGCAGAGACGGAAGAAAGAGagttggaggacaaaaaaaggaAAGAGGATGAAAAGTTGAAAAAAGAAATATGGGACACAGAAAAAGAGAAGATGGAAAAAGAGATAAAAACTCAGGAAATAAAGTTGAAAAACCTCCAAAAAGAAAAGGAAGAAGAATATAAAATGAGGATGGAAAAACTGAGAAaagaagagaaagacaaagaaGAACGGCAAATAAATCAGGAATGGAAGTTTGATAAACTAAAAAGGGAACAGGAGGAAGAAattaaaaggagagagaaagaagaggatgagaggagaaagaaggaagagaaagaaagacaagaGTGGCAAAGAAAAATAGAGGAAGCAGAGAAAGGTCAAACAGAACTCCAAGAAGTCATGCGTAGTGAaaaagaggaatgggaggaacagttgaagaaagaaagagacagacaacAGGAAGAAGAAAGGctgaggagacagatggaggcaGACACTcttgtagaacaagaggaaaaaCAGAGGACATTGAGAGAGGAgtttgaaagagagagggaacgagataGAATAAAGATGAAGGAATCAGAAGATCAGAGGAGAGAAACCGAGCAGAAAGAAAGAGAACGAATAGAAAAAGACTttgaagaaaagaggagagagttgacagacaaaatgacaacGCAACGAGAGCAGTGGGAGAGAGAACGTGGAGAGGAACATGAAAGAAGAATTCAAGAGGATGTAAAtagaagagtggaggagagactAAGACTAAGAAAACTGGAGGAAACATTTCACCAAGAACGTGAAGAAGAGAATATgaggaaagagaaggaagatAAAGTCAGGAGAGAACAAGAAGAGAAGAAATGGAAAGAAATGAGGGCAGATTATGAAAGAAAAACAAAAGAAATGATGGATAAATATGAACAAGAGGCCAGAAGACATGCAGAGGAAATGAATAACTTTAAAGAGAAATATGAAAATGACTTCCAAAAACTATTGGATCAAcatgaagaagagaaggagaaactGATATTAAAGCACAAAGGGGAGTATGATCTTTTGAATGCTCTATATGGTCATGATAAAACAAAACTCACTGAGAAAATCAATGAATTACAAGAGACGCATGAGGAAGAGATAAAGCACCTGTATAAATGTGTTGTACAGTGAGTATCTTGAGCCCTATTTGAATGGGAttggtataattaagcaataaggcccaagccggtgtggtatatggccaatatactgtaCCAAGGCGAAGGGTTGTTCTTATGTACGACGGAGCCCCTGGATACagcacttagccgtggtataATGGCCATATGCTACAAAcctctgaggtgccttattgctgttataaaccgGTTACCCAcacaattagagcagtaaaaatatttttgggtcatacctgtggtatacggtctgattttccacggctttcagccaatcagtattcagtGCTCAAAGCACCCAATTTATTATAACTAATAAACATTGTaacttaatacatttttaaatagaCTGCGGTGAAATGAGCAGCAGTGTGAAGCAAAGATAATTCAGAGTGAGCGTGATGCAAGAGGTTAGACTCCCACACAGAACATCTGCGGCTGTGTGCTTGTGCATGGGATTTCACGTCACTCTCCTGTGATGTGAAAGCTGCCTGATACTATTTTGAATAGATATTCTCTGTCCTAGAACATCAGTACATGAAGGGGAATTGTCCAAAACTCCATTTATGGTTTCTAAACCTATTTGTTAGATTTATTGTTTATTATCCTTGTTCAAAGCCTTTTCCTTGGACAGATCAGACTGGCCATGACTCATGAAAGTAAACATGTTGCTGGATTGTTGGTCATTTTTTATCGATGTGCTAGGGTGTCATTTTCCTAAAGTCTGAAATTAGCATGTTGAGCACTTTAGTTAGTCTCCATTCAAGGACACTGTCAATTTCACTAAATACTACCATCCACAATATACACGTGATAAAGCAGCAGTCTATTGAAGCCCTATTTGAATGGGGCCGGTATAATTAAGCAGGGaggccagaggaggtgtggtatatggccaatataccacggctaagtgctGTTCTTATGATGTCATATGTTTCATTTTTCTATCTGTGACTGTGCTTTATATATTCTGATGCTATTTCTGTCTTTGTGTTGTAACAAACCAGAGAATAAAAGACAAATCAACAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2436344 lncRNA downstream 118 34037063 ~ 34038670 (-) True G2130775
TU2436437 lncRNA downstream 10045 34028519 ~ 34028743 (-) True G2130865
TU2436431 lncRNA downstream 16731 34021828 ~ 34022057 (-) True G2130859
TU2436429 lncRNA downstream 18045 34020505 ~ 34020743 (-) True G2130857
TU2436428 lncRNA downstream 18522 34020049 ~ 34020266 (-) True G2130856
TU2436709 lncRNA upstream 35200 34093544 ~ 34094130 (-) True G2131112
TU2436749 lncRNA upstream 83714 34142058 ~ 34207960 (-) True G2131151
TU2436761 lncRNA upstream 111007 34169351 ~ 34173099 (-) True G2131161
TU2436795 lncRNA upstream 183037 34241381 ~ 34241613 (-) True G2131194
TU2436803 lncRNA upstream 193583 34251927 ~ 34252855 (-) True G2131200
XM_021589993.2 mRNA downstream 37932 33997091 ~ 34000856 (-) True LOC110509046
XR_005040258.1 mRNA downstream 40772 33997091 ~ 33998016 (-) False LOC110509046
XM_021589991.2 mRNA downstream 47998 33977576 ~ 33990790 (-) True LOC110509045
XM_036966941.1 mRNA downstream 53673 33977576 ~ 33985115 (-) False LOC110509045
XM_021589988.2 mRNA downstream 66051 33953697 ~ 33972737 (-) False LOC110509043
XM_036966339.1 mRNA upstream 7195 34065539 ~ 34075144 (-) True LOC110509051
XR_005040274.1 mRNA upstream 189601 34247945 ~ 34250438 (-) False LOC118944872
XR_005040273.1 mRNA upstream 189607 34247951 ~ 34250438 (-) True LOC118944872
XM_036967153.1 mRNA upstream 199851 34258195 ~ 34268977 (-) False zgc:110366
XM_036967154.1 mRNA upstream 199851 34258195 ~ 34268991 (-) False zgc:110366
TU2435888 other downstream 639704 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1808574 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1873766 32062049 ~ 32165022 (-) False asip2b
TU2437325 other upstream 427525 34485869 ~ 34486176 (-) True G2131621
TU2437347 other upstream 458178 34516522 ~ 34518129 (-) False G2131641
TU2437349 other upstream 458178 34516522 ~ 34518129 (-) True G2131641
TU2438804 other upstream 1947145 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 1957718 36016062 ~ 36017832 (-) True lyrm4

Expression Profile