RNA id: XM_021590014.2


Basic Information

Item Value
RNA id XM_021590014.2
length 1117
RNA type mRNA
GC content 0.52
exon number 8
gene id zgc:110366
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34258195 ~ 34269017 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTCGCCGCAAGGCTTTTAGTTTTACGACGTATTTGGAAAATTGGATTCTAGCGGCACCCCGGAAACGTCCTATTGAATATAATAAAACGCATTAGTTGGTTTTACAAGTCACAGTTGAACAAACATGAATTCTATTGTAACGACTTGTCCTAAAGTTTCTCTTTCCAATGGCCTGCAAATTCCAATTCTTGGACTGGGAACATCACATGACGGCGGGTATTCACATGACGCCATGTTGTATGCACTCCGCGAGTGTGGCGTGCGGCACATCGACACAGCGAAGCGTTACGGCTGTGAGGAGCAGCTGAGTATAGCCGTGCAGGAGAGCGGAGTACCGCGGCAAGACCTATGGCTTACAACCAAACTGTGGCCCGGAGAATACGGCTATACCGCTTCCAAAAAGGCCTGCCGCGACTCGTGTTCCCGCCTAGGGGTGGAATACCTTGATTTGTACCTGATGCACTGGCCAGATGCCATGGTCCCAGGAAGGTCCAATAGGGAGGTCAGGGTGGAGACTTGGAGGGCCTTGGAGGAGCTGTATAATGAAGGCGTGTGTCGTGCCATCGGCGTGAGTAATTTCCTCGTCTCCCATCTGAAGGAGCTGAAGGAGGACTGTAGTGTGGTGCCTCACGTCAACCAGGTGGAGTACCACCCGTTCCAGCAGCCAGAGGAGCTGGTGGAGTACTGTCGCCAGGAGGGCATCGTGTTCGAGGGCTATTGCCCCCTGGCCAAGGGTCAAGCTCTCAGCCACCCCACCATCCTCCAGCTGGCACACAAGTACGCCCGCACGCCCTCTCAGATCTGCATCCGGTGGAGCGTACAGAATGGAGTTGTCACCATTCCCAAGTCCACCAAAAACGAGAGGATCCTGGAAAACTGTCAAGTCTTTGGGTTCCAACTGGAGGGGAAAGACATGGAGGCATTGGGCAAGTTGCATGATGGGAGACACGTGAGCTGGGATCCCACATGTGTGGAGTGACAGGTCTTTGGGTTCTCCCTCTCAGTTGAGGACGTGGATCGCGTCAGGAGACTCCACAGTGACATGAAGCTCATTCATCTCAGCTGGCCACTCTGGAAAGGATTATCGtcttaaataaaatacaaaacttTTAGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K23257 yvgN; methylglyoxal/glyoxal reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2436811 lncRNA downstream 2851 34254607 ~ 34255349 (-) True G2131203
TU2436803 lncRNA downstream 5345 34251927 ~ 34252855 (-) True G2131200
TU2436795 lncRNA downstream 16587 34241381 ~ 34241613 (-) True G2131194
TU2436749 lncRNA downstream 50240 34142058 ~ 34207960 (-) True G2131151
TU2436828 lncRNA upstream 10144 34279161 ~ 34279491 (-) True G2131215
TU2436829 lncRNA upstream 12079 34281096 ~ 34281305 (-) True G2131216
TU2436832 lncRNA upstream 14816 34283833 ~ 34284032 (-) True G2131219
TU2436815 lncRNA upstream 35711 34304728 ~ 34305221 (-) True LOC110509056
TU2436848 lncRNA upstream 52884 34321901 ~ 34322185 (-) True G2131234
XR_005040274.1 mRNA downstream 7762 34247945 ~ 34250438 (-) False LOC118944872
XR_005040273.1 mRNA downstream 7762 34247951 ~ 34250438 (-) True LOC118944872
XM_036966339.1 mRNA downstream 183056 34065539 ~ 34075144 (-) True LOC110509051
XM_021589999.2 mRNA downstream 199856 34038788 ~ 34058344 (-) False LOC110509052
XM_021590021.2 mRNA upstream 15251 34284268 ~ 34300628 (-) True vcam1a
XM_021590008.2 mRNA upstream 35689 34304706 ~ 34321590 (-) False LOC110509056
XM_036966668.1 mRNA upstream 153155 34422172 ~ 34481857 (-) False LOC110509050
XM_036966669.1 mRNA upstream 156590 34425607 ~ 34481859 (-) True LOC110509050
XM_036966882.1 mRNA upstream 303016 34572033 ~ 34604132 (-) False LOC110508232
TU2436349 other downstream 190127 34041438 ~ 34068073 (-) True G2130780
TU2436339 other downstream 191535 34040206 ~ 34066665 (-) True G2130771
TU2436347 other downstream 199930 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 215635 34041569 ~ 34042565 (-) False LOC110509052
TU2435888 other downstream 859116 33398547 ~ 33399084 (-) True G2130393
TU2437325 other upstream 216852 34485869 ~ 34486176 (-) True G2131621
TU2437347 other upstream 247505 34516522 ~ 34518129 (-) False G2131641
TU2437349 other upstream 247505 34516522 ~ 34518129 (-) True G2131641
TU2438804 other upstream 1736472 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 1747045 36016062 ~ 36017832 (-) True lyrm4

Expression Profile