RNA id: XM_021590021.2


Basic Information

Item Value
RNA id XM_021590021.2
length 2708
RNA type mRNA
GC content 0.50
exon number 10
gene id vcam1a
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34284268 ~ 34300628 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTTTTTGCAGGAATCTTCTAGCTTGGATGGAAGGATCGAACAAAGGGAAGGAGGACAGTTATCCTGCTGACTAAGACATGGAAATAGCCTATCTCTCTCCCTCCTGACACATGTCAATGACCTGATGCATGGCCTCTACAGCAGTGCTTGGCCCCACACTCAGTTACCAGTGATCTATTCTGCCACATCCCAGGGAAAGGAGGGAGTGGAACCACCCATCCATCATAGTCATTGACAAGCATGACTGCGTTCGCGCTTTGGATAGTATTGCTGCCTACTGCAGCGTCGAAATTTGTCCTAAACCTCACACCGAAGCATCCCATGGCTCGAGTCGGCGACAGTCTGGTCCTGACGTGCAAAGCCAGTGGTTGCGCCGAAGCCGTCACGTTCACCTGGTCTTCATTGATTGACCAGTCACTCTACGGTAAAACGGAGACCAACGGGACAGTGTCCCTGCAAATATTTAACCCGTTGGGAATTCATCACATCAACACGGTCGTCTGTAAGGCCACATGCAGAACCAAAGGAGAAGATACACAAAACGCGCAAACGTCTACTAAGGTGAACGTCTACGCCTTACCAAAGGATCCCACCATATCAAGAAGTGACCTTTTGACTGAGGGTCAGGAGAGTAACCTCACCTGTACAGTTCCAGATGTGTACCCAGCTGAACGTCTAATCATTGAGTGGCTACTGGGAGATGAAGTTCTCCTCAAACAAGATGAACATCTGGAAGTCCAGACTGTCACCTCAGTGTTGAAATACAGACCGACAGCCCAGAACAATGGACAGAATGTTACCTGCAGAGCCACGCTGGACATTGGGATTGACAAGAGAACCAGAGAGACTGTCGCATCAATGACCGTTCAATATTCCCCCAGAAATATCACTATCTCAGAGAACACTCAGGTGAAAATCGGAGACGGTTTTACACTGACGTGTCGTGCTGAGGGGAACCCTGAACCTACTGTGTTGTGGAGAAAACTGGACCAAGATGGCCGCTCAGTCGTGGCAGGAGAGGGAGCGACCCTATTGGTGGAAGAAGCGTCATGGTCCCACGGGGGAGAGTATGAATGCGTGGCCCACAACGTCGTAGGAAACCTTACAGCTCACATGACTGTTAATGTTCAAGGTCCTCCAGAGAAGCCTGTTCTTTATCTGAGCCCATCTGGTGAGCTGAAAGCGGGGGACAGTGTGACCATTACCTGCCAATCAGAGAGTGGGCCGCAGGGGCGTGTGGCGTTACGCCAGTTGACCGGCAGTCAGGGGGCGGAGCTAGAGTCCAACCAGGGCCACACCTCCATCACTGTCCAATCGCTGACAGCTAGAGACTCGGGACTGTACGAATGTCAGGCTACCAATCCCTATGGGAAACAGACATCTTCCATTAACATCACAGTCTTCAATGAGCTTTATACAGAGACCCAGAGAACCACAACGACTGTCGCATCAATGACAGTTCAATATTCCCCCAGAAATATCACTATCTCAGAGAACACTCAGGTGAAAATCGGAGACGGTTTTACACTGACGTGTCGTGCTGAGGGGAACCCTGAACCTACTGTGTTGTGGAGAAAACTGGACCAAGATGGCCGCTCAGTCGTGGCAGGAGAGGGAGCGACCCTATTGGTGGAAGAAGCGTCATGGTCCCACGGGGGAGAGTATGAATGCGTGGCCCACAACGTCGTAGGAAACCTTACAGCTCACATGACTGTTAATGTTCAAGCGCCGCCCACAAACCTGTCCGTGGAGGTGTTCCCGTCTGCTGAGTTTGAGAAGGGGCAGAACGTGACCATCTGGAGCTGGGCTGTGGGCGTTCCCGCCCCCTCCGCCACCCTGGTGAGGCTGCGGGATGGGGTGGAGATGCACTCCTCTGACGGAACCTTCCACCTGGTCCACCTGGGCCCGGAGCACGCTGGGCTCTACCTGCTCAATGTCACCAATGTAGTGGGACACCAGAGCCTCAGCTTCAGCCTCAGCGTCAGCATCCAGGATAAATCCGTCAATCCAAAGACCGTCATCATACCTGCAGCGTGCTTTGTTTTCATGACCGCTGCTGCCACGACTCTGATGCGATTCCTGAAGAGAGCAAAACAGGCAAATTCATATGAACTTGAAAGGACAGTTTAGACTCCCCccatggagggaagagagatggactCAACATCAGTCTGCAATTGAGCACTGTAACAGTCCACTTCTAGCATCGAGGGGGTGTTTTCCTCAGAGGTGGACAGAGACTGTATTCTTCGTTGCTATTGGTCAAGTGAAGCTCAAACACGCACGCACTGAAATCATGGTCTCCATTCAATCCGTATCGTGGAAGTTGattgaaatgtaaatgttttccAGTTGAGCCGACGGATACAGCAGTCtacgggaacattgccttttaaAATTCAAATTGCGCTACAGCGAAGAACCTTCCGCGATACGGACTGTATTGAGGCCTAATTGTTTGTTTATGCGTGTTCTCTACTGGTGGATGTACAAAGCCATGAATGTAACTGATGATTTGCACAGGTATGACTTCTAGCATCTTGTAATACCTTTAGTCAACCACCAGCCCAGGACATTGCGTCACTGCAGCATCAGACCTTCTTTCACTAGAGTTTATATTATTGctgtatataattttttttaaagaaatgtgaATTAATATGTTTTGTACAGACTTATTGTAATAAAGATGACAATGAAAAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2436832 lncRNA downstream 236 34283833 ~ 34284032 (-) True G2131219
TU2436829 lncRNA downstream 2963 34281096 ~ 34281305 (-) True G2131216
TU2436828 lncRNA downstream 4777 34279161 ~ 34279491 (-) True G2131215
TU2436820 lncRNA downstream 18667 34263822 ~ 34265601 (-) True G2131211
TU2436818 lncRNA downstream 21878 34261775 ~ 34262390 (-) True G2131210
TU2436815 lncRNA upstream 4100 34304728 ~ 34305221 (-) True LOC110509056
TU2436848 lncRNA upstream 21273 34321901 ~ 34322185 (-) True G2131234
TU2436816 lncRNA upstream 75284 34375912 ~ 34379555 (-) True G2131208
TU2436900 lncRNA upstream 97089 34397717 ~ 34397987 (-) True G2131279
TU2436903 lncRNA upstream 100328 34400956 ~ 34401502 (-) True G2131282
XM_021590015.2 mRNA downstream 15251 34258195 ~ 34269017 (-) False zgc:110366
XM_036967152.1 mRNA downstream 15251 34258195 ~ 34269017 (-) False zgc:110366
XM_021590014.2 mRNA downstream 15251 34258200 ~ 34269017 (-) True zgc:110366
XM_036967154.1 mRNA downstream 15277 34258195 ~ 34268991 (-) False zgc:110366
XM_036967153.1 mRNA downstream 15291 34258195 ~ 34268977 (-) False zgc:110366
XM_021590008.2 mRNA upstream 4078 34304706 ~ 34321590 (-) False LOC110509056
XM_036966668.1 mRNA upstream 121544 34422172 ~ 34481857 (-) False LOC110509050
XM_036966669.1 mRNA upstream 124979 34425607 ~ 34481859 (-) True LOC110509050
XM_036966882.1 mRNA upstream 271405 34572033 ~ 34604132 (-) False LOC110508232
XM_036966883.1 mRNA upstream 271405 34572033 ~ 34604132 (-) True LOC110508232
TU2436349 other downstream 216195 34041438 ~ 34068073 (-) True G2130780
TU2436339 other downstream 217603 34040206 ~ 34066665 (-) True G2130771
TU2436347 other downstream 225998 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 241703 34041569 ~ 34042565 (-) False LOC110509052
TU2435888 other downstream 885184 33398547 ~ 33399084 (-) True G2130393
TU2437325 other upstream 185241 34485869 ~ 34486176 (-) True G2131621
TU2437347 other upstream 215894 34516522 ~ 34518129 (-) False G2131641
TU2437349 other upstream 215894 34516522 ~ 34518129 (-) True G2131641
TU2438804 other upstream 1704861 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 1715434 36016062 ~ 36017832 (-) True lyrm4

Expression Profile