RNA id: XM_036966668.1


Basic Information

Item Value
RNA id XM_036966668.1
length 5497
RNA type mRNA
GC content 0.58
exon number 53
gene id LOC110509050
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34422172 ~ 34481859 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACACGCTCCCCCAACCGCACTGACGCACCTGTCGCTTGCCGCGCACACAGGTGTCGGGCCTGGCTGCTTGTATGTTgcaggagatagaggagaggagcacGCGAATTTGCTAAATCCAATAGTGGCGGGAAGATCATCTTCAAGATGAGGACTTCGTTGCTTTGTTTTGCTTTGGGGGTGATGCTGCGAGGAATTGAGGCGAAGGATTGTGCGTGTACTGGGAAGTCCATGTGTCACTGTGAAGGAGTCAAAGGCAACAAGggagaaaggGGTCGTGCAGGAGAGACGGGTCCACCTGGGTCGGTTGGGCATCCAGGCTCAGAGGGTCACCTTGGACCTGTGGGGCCAAAGGGAGATGTGGGCCCTCATGGACCTCCAGGAACAGATGGCGATCGGGGACCTGAAGGTAAAGAAGGATTTTCTGCGACACCAGGTCTACCgGGCATCCCAGGCCTTCAAGGACCAATGGGCCAACCAGGTTCCCCAGGATGCAATGGGACAGAGGGTGAGAGAGGTGCTACTGGTCCAGCTGGTCcctgtgatggtgatgatggatTAAGAgGTTTACCTGGAGCACCTGGACCAAAGggTGAATCCCAAATGTTAATTGGGTTTGGACAGTCAGGGAGACCTGGACCCCGAGGAAGGGACGGTGACCAGGGTGTCCACGGGGTAACAGGACCGACAGGACAACAAGGGGACGTTGGGCCCCGTGGTGTCGTTGGATTGCTAGGTCTACCCGGGATCCCAGGGTTAAAGGGTCAAGAGGGACGCAGCTCCAGTATCCCTGGCTCTGGTGGTCCAAAGGGACACCAAGGGCCACCTGGATTCCCGGGACCCAAAGGGATCAAACTATATGCCCACGCTCCCTCCGATTTGAAGggggagacaggggatcTGGGTGAGAAGGGCTGTAAGGGTTCACCTgGTTATGCTGGCCAGGTCAACTTTAAGGAAAAAGGGGACCAGGGGGGCATTGGCACTGAGGGAAGACCAGGGAAAGATGGGCGTCAAGGGCCCGCTGGATATGAGGGGAGAAAGGGGAATCCCGGTTTAGCAGGACCTGATGGAATACCTGGACCGCGGggAAAGAAGGGCGTCCAGGGTCAAGACGGAGACCCTGGGGAGGTGACCATGATTGGCTGTGACGTAATTGGCCCCAAAGGACAACCAGGATTTACTGGCCCCCCGGGTCCCCCCGGGGTTACTGGTCCCCCAGGTGCCACTGGATTCCAGGGGCCTCCTGGGTCTCCAGGTCCTAACAACGGAGGAGATCCCTACAATCGGGGAGCGAAGGGCCACAGTGGGCCTAAAGGGGATGAAGGAGAGCCAGGACCCATCATCCAGGGAGAGCCAGGCAGGGAAGGCTCACAAGGAACAACTGGAGACCTTGGACCCCCGGGACCACCTGGAGAATCAGATAATCTGAAGGGTGTTATCGGACCTCCGGGGGCAAAGGGAGCCAAGGGAGAACAAGGGTACGGTGGCCATTATGGATCGAAAGGTGAGAAAGGGGAGGTCTGTAGTTTGTGTACGGGAAAAGGATCTGGAGAGCCGGGACCCCCAGGTTCCCCTGGTCAGCCTGGAGTCCCAGGCTTTAGTGCAGGACCAGGACCCAAAGGAGAGCCAGGATTCAAAGGACCCTCGGGATCACCTGGACAACAGGGTCTCCATGGCCCTTCAGGTGTTCCAGGACCCCCAGGGCCAAAAGGAAATTCAGGTTCCTGCAATCACCAGGGGataaagggagagaaaggagccccaggaccagctggcagATCAGGGCTGGACGGCCTATACGGGGCCCCTGGCTTTCGTGGACGCAAGGGCCAACAAGGCCCTAAGGGTGATCCATACGATGGGCCACTGGGTCTGAAGGGAGATACTGGTGTCCCGGGCCCTCCCGGGCCACAGGGATACCCAGGACCAGACGGTTCACCAGGTCCAGTAGGCATAGGACCGCTTGGCCCCCCAGGACCTAAAGGCAATAGTGGGGTACCAGGTCTACCTGGTACACCTGGTTACCGAGGTCAGAAGGGCGAGCCCTGCAGCGGTGTGGCTGACCAGGGAGTCCCAGGCCTACCGGGAAAGGCGGGGCTGCCGGGCACACGGGGCCCCCCAGGTCCTCGTGGTGGTGCTGGTAACCCGGGGGAGAAAGGGGACAGTGGTGTATTCTCCACCCTGGGAAGACGAGGACCCACTGGACAGAAAGGTGACAAAGGGCAGCCGGGACGCCCAAGTACCTCTGGAAGTGGCTATCCTGGACGACCCGGCGTAATGGGATTCCCTGGAGCTCAAGGGCCAAAGGGTGATGCTGGGTTTGAGACCCTAGGTCCAGCCGGCCCTAAAGGTTTCCCAGGTGGTGTTGGGGCCCAGGGCCCTCCTGGAGATCCAGGAGTACTGGGCCGACCAGGGAGTCCGGGACCACCCGGCATCAATGGGTCTTCAGGCCCCAAAGGAAGTAAAGGTGTAGATGGTTCCCAAGGACCTCCTGGTTACGCAGGTACTTGCTGTACTGAAGCCCCAACCGGACCACCAGGGCTGTCAGGCAGACCTGGACCCCCAGGTATTAATGGAGAGATGGGTTCGTGCGGGGACCCTGGCACCCCGGGGTTTGGAAGCTCAGGTCCGGCTGGTGACCCTGGGCCCCCTGGGGCCTCCGGACCCGTAGTGCAAGGCCTGACTGGACAGatgggaggcagagggagagacgggTTACCAGGTGCATCAGGTCCTAGAGGTGACCCTGGGCTGGAAGGAAGATCTGGACCGGGCCCTGACGGCCCACCTGGACCTGAAGGACCACCCGGTCctaaagGGTCGGTTGGCCCTGATGGGGAGAAAGGTCACAGTGGTGTACCAGGCTCTGTGGGGGACGACGGGCCCCCAGGCCCTTGTGGACCATCATCCGATACAGTCATACATGGGCCCCCAGGGGACCCTGGGAAACATGGTCTGCCTGGTTTCCATGGTGCTAAAGGACACCCTGGATATCCTGGACCCAAAGGCATTGATGGGAGGGACGGTGACCCAGGAAATGGGccgagagGCTGTCCAGGTGATCCTGGGGCTGATGGactgtgctcaggaggaccaggCCCATCTGGACTCAGAGGAAATATGGGGCTCATGGGtctaccagGTCCCCATGGAACACAGGGAGAGCTGGGTTCCAATGGAGATGCAGGACTAGACGGTAGGCCCGGTCCACGCGGGCCAAAAGGAACTAAAGGAGAGTCCAGTTGTGCAAAACCAGGCCTCCCAGGATCACCTGGACAGAAGggcGAGCCAGCCTTGAATAACAAACATGACTCCAAAGGAATGAAAGGCTCTCCTGGTTACGCAGGTCCTCCAGGCTCCCAAGGACCCTCTGGAGCCAAAGGAGACCCAGGACACCATGGAGCCCAAGGTCCTGCTGGCCAACCAGGTACTGATGGTCCCCCAGGCCCCCCAGGACTCCCTGCGTCACATGGAGCTCCAGGACAGCCAGGGTTACCTGGCCTTCCTGGTCCCTATGGTCCTAAAGGTAACCAGGGTCACGATGGCATTCCTGGACCTGCTGGTCAGAAGGGAGAGACACTGATTGTGAGATCAACTCCTGGCCCACGTGGAAAGAATGGACTGCCAGGTCCAAAGGGAGATGTGGGTTTCCCTGGCCCCACTCCTCCGGGGCCCCCAGGATGTCCAGGAGATCAGGGCCACCGAGGCAACGAAGGACCCCAGGGTTCTCGCGGGAGGCCAGGGTTCGGTGGTGTTTGTGTCAACGGGCTGAAAGGAGATGCTGGTTCCCATGGCAACCCTGGAAGCCCTGGACAGCGGGGTCCACAGGGACAGCCAGGGTCTGGAGGCTATGAATGTAAAGGGGACAGGGGAGACCTGGGCGCTCCAGGGGGCAGAGGCTTGGACGGGCCTACGGGGGACCTCGGACCTCCAGGGCTACCGGGGCCAGGATCCATCCCTGGACCTCCAGGACCAATCGGTTCCCCAGGTCACTCTGGAACCCCAGGAGTCCCCGGTGAGATGGGTGATCCTAGTTTTAACCCCGGCCCGAAAGGACCAAATGGATCCAGAGGCCCGCCAGGACCACCAGGTTGTCCGGGGCTTGATGTGCCAGTGAGACCCGAAAAGGGGGATCCGGGCCCACCCGGTTACACCGGTAACCAGGGACCTCCAGGTCACAGTGGGCTGCCAGGAGAACCAGGATTAACAGGCCCCCCAGGCCCTGAGGGTCAACAGGGACACAGCCCTCCAGGCCTGCCTGGCTTCCCCGGATGCAAGGGAGACAAAGGATCGCCAGGACTGACAGGGCCGTTGGGCTACCGGGGGTTTCCGGGTCAGAAGGGTCCTCTTGGCCCACGGGGCAGCAGCACGGCAGGCCTGGCTGACAGTTTCCTGCTGGCCCGACACAGCCAGACCATCAGAGTGCCTGACTGCCCCCAAGGCACCGCCCTCATCTACTCTGGATACTCTCTGCTCTTCATCAATGGCAACAAAAGGGCTCACGGACAAGACCTGGGCTCCATTGGCAGCTGCCTGCCTCGTTTCTCCACCATGCCCTTCCTGTTCTGTGACACGGACAACACCTGTCGCTACGCCGCCCGCAATGACTACTCCTATTGGCTGTCCACGGAGAAGCCCATGCCACGCAGCATGGACCTGATCAGAGTAGACGAGATAAGCAGCTACATCAGCAGgtGTTCAGTGTGTGAGGGCAGCTCCAATGCCATGGCCATCCACAGCCAGACCGCCCAGGTCCCAGACTGTCCTGGTGACTGGGAATCCCTGTGGGCTGGATACTCCTTTGTCATGCAAACGGGTGCGGGTGCTGAGGGGTCGGGCCAGCCTCTGGGCTCCCCAGGGTCGTGTCTAGAACACTTCCGCCAGGTCCCCTTCATCGAGTGTCACGGCCGGGGAACCTGTAACTACTTCCCTGACTCCTACAGCTTCTGGCTGGCCTTGCTCGACCCCAACCACATGTTCAGTAAGCCTGTGCCCCAGACGGTGAAAGGACCTCTTCTAGAGAACGTCATCAGTCGCTGCCGCGTATGCAGGAAACCACAAAGCAATGacAAATCCAGCCAGGCTCAAGCGCTCACTCAAAATATTTGGAAGATGTAAGATACTATTTGCAAACTGGTATGGTTCCCAGTCCAAAAGACACGGTTGAATTATTCTGAATCAAGACAGACATCTTTATTTAAGATACCTTGGAATATCACCTTCTGGGTTGTAATTATATTGAGCTCTTCATGACTTGCACTGAGGACCACGCATGTGATTTTAATGTATCTAAGTGGTTTTATAAAGTCTCAAGCACTGTACTGTATTTCGCTATTGTGTTTGGCTCTATTAACATGTATATTTGATAATGTGTCTTGGTTATTCCCTTCAACATAGGGTGCTctctaacaaacaaaaaaaaaacgtgttttttgttttgttttgtatttgcaaaaaaaaatggtTGGATATTTCCAAATAAACATTCACTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2436902 lncRNA downstream 12720 34405857 ~ 34409452 (-) True G2131281
TU2436906 lncRNA downstream 16834 34405003 ~ 34405338 (-) True G2131285
TU2436904 lncRNA downstream 18124 34403636 ~ 34404048 (-) True G2131283
TU2436903 lncRNA downstream 20670 34400956 ~ 34401502 (-) True G2131282
TU2436900 lncRNA downstream 24185 34397717 ~ 34397987 (-) True G2131279
TU2436949 lncRNA upstream 1252 34483109 ~ 34483386 (-) True G2131318
TU2437323 lncRNA upstream 1841 34483698 ~ 34483954 (-) True G2131619
TU2437327 lncRNA upstream 12262 34494119 ~ 34494644 (-) True G2131623
TU2437355 lncRNA upstream 86645 34568502 ~ 34570391 (-) True G2131643
TU2437431 lncRNA upstream 104861 34586718 ~ 34587111 (-) True G2131691
XM_021590008.2 mRNA downstream 100582 34304706 ~ 34321590 (-) False LOC110509056
XM_021590021.2 mRNA downstream 121544 34284268 ~ 34300628 (-) True vcam1a
XM_021590015.2 mRNA downstream 153155 34258195 ~ 34269017 (-) False zgc:110366
XM_036967152.1 mRNA downstream 153155 34258195 ~ 34269017 (-) False zgc:110366
XM_021590014.2 mRNA downstream 153155 34258200 ~ 34269017 (-) True zgc:110366
XM_036966882.1 mRNA upstream 90176 34572033 ~ 34604132 (-) False LOC110508232
XM_036966883.1 mRNA upstream 90176 34572033 ~ 34604132 (-) True LOC110508232
XM_036966648.1 mRNA upstream 231410 34713267 ~ 34728197 (-) True LOC110509072
XM_036966430.1 mRNA upstream 255605 34737462 ~ 34761420 (-) False gk5
XR_005040214.1 mRNA upstream 255605 34737462 ~ 34761420 (-) False gk5
TU2436349 other downstream 354099 34041438 ~ 34068073 (-) True G2130780
TU2436339 other downstream 355507 34040206 ~ 34066665 (-) True G2130771
TU2436347 other downstream 363902 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 379607 34041569 ~ 34042565 (-) False LOC110509052
TU2435888 other downstream 1023088 33398547 ~ 33399084 (-) True G2130393
TU2437325 other upstream 4012 34485869 ~ 34486176 (-) True G2131621
TU2437347 other upstream 34665 34516522 ~ 34518129 (-) False G2131641
TU2437349 other upstream 34665 34516522 ~ 34518129 (-) True G2131641
TU2438804 other upstream 1523632 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 1534205 36016062 ~ 36017832 (-) True lyrm4

Expression Profile