RNA id: XM_036966883.1


Basic Information

Item Value
RNA id XM_036966883.1
length 4610
RNA type mRNA
GC content 0.55
exon number 6
gene id LOC110508232
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34572033 ~ 34604132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctatgtgtgtgatgctggtagggtctgtctatgtgtgtgatgCTGGTAGGGTCTGTCAATGTGTGTGATGCTGGTAgggtctgtccatgtgtgtgatgctggtagggtctgtctatgtgtgtgatgCTGGTAGGGTCTATCCATGTGTGTGATGCTGGTAGGGTCTGTCCATGTGTGGGTGATGATGGTAGGGTCTGTCGATGTGTGTGATGCTGGTAGGGTCTGTCGATGTGTGTGATGCTGGTAgggtctgtccatgtgtgtgatgctggtagggtctgtccatgtgtgtgatgctggtagggtctgtccatgtgtgtgcaGATGAGTGTAAAGCTGGCTCCTGGGTTGGAGTATAGCATTGTTTGGACAGGGGCCTTGGGTCTCTCTGGCTACCCAGGGGAGGGAGCACTGGCCTGGGCATCGACAGGCCTCGCTACCCCCTGTCACCGCCTTGGCCCTGGAGGACTCCTTTGAGCAAGCCCAGCTGTTGGGAGCGTACAATGGCTACTGGGCTTCCCTGTGGATTGAAGTGGCTTTCTGTACACGTGCTCCGAGATCTGTCTGAGTTGTTCTGCGTCTCGCACTGGACCCACCTGGAGAACATTGCTTTGGCCCTCCTCAAGCCAGCAGGGACACAGCTCTACTgatggGCGAAGAGGTGGTGACCGAGGAGAAGCACCTGCACATGGGCTCCATGACCATGCCAGCCCCCCCGCAGCTTGCTTGCGGGCCGGGCTTTGCCGTGCGCTCCCAGTCACTACACTCGGTGGGCGGGGGCAGtaacgatggtggggaggaggagatgggcaGCCCTACCTCCCGTAAGCAGCCCCCACCCAAACCCAGGAGGGACCCGGCTACCAAGCTGAGCATTTCCTCTGAGACAGTGGAGCACAGCCCCACCTTGGTCTGCAGGGGCTGCAGGGTAAATTCGGATGCGCCACAAGGCTGCGGAGAAGACTGCAAGAGGGTCCCTCCGCCCAAACCCAGGAGGAACCCCAAAACGCAGCTGAGCACCTCCTTTGATGATTCCTGCATCAGGAAGCACATTGGCTCCAAGAGTCACTCCCCCTCTGCCGAGTGCGAGCGCAACCCCTCTCCGCCGAGCGACGAGAGTCCCAGCCACCACTCCGACTCGGATGAGCCTGTCTACATCGAGATGGGCGCCAGTGTTGGGGGCGGCGGGCACACAGAGGCGCCCAAGAGTGAGGACGAGGAGCTGGGAGAGTCTGTGTACGAGGAGATGAAGTACCCTCTCCTGGATGATATGGACTACTGCTGGGAACCCCCAGGGTGCCGCTCCGCCTGCCCCATCCCGGCGCTCCTGGACCCAGAGTCTCTCAACCGCTGCTCCACCCCGCGTAACATTCCCCTATGCGACATCCCTGCGCCGTTTCCCAACTTGCTCACCCACCGGCCGCCCCTCCTGGTGTTCCCCCCTGCGCCGGCCCAGTACTCGCCAAACTCGGACGAGTCCCCGCTCACCCCTCTGGATCCACTGACGAAGCTGCCCATGATGGACAACCCCTGCGCCTACAACAAGTCTCCCACCTCCTCTTCTGAGCCCCCCCTGGCGCACCTTCGCAGGGAGCTGACAGCCACGCCCACCCTGACAGTGTCGGGTCGCTCGTCGGCTCCGCCCCTGCCCTGCACCCTCTACAAGTCCTCAGCCTCCTCAGCCCACGGTTATCAGCGCAGCCACTCAGCCTGCCCCTCTCCCGTCAGCATGGGCCGCTGCCTCACGCCGCTTAGCCTGATGCGCACACCGCCCTTCGACGCCCCCATGCCCCTCACGGGCGGGCTGCCGTGCAGCGCCTCCACCACGCCCCATGGAAAGGGCTCGCCCCCACAGGACTGCATAGCTGGGGGCAGGCTGCATGGGTCGATGCAGAACGTATCCACGGGACGCTCACGCACACCGACCAGCCCCCTGGACGAGCTGACCAACCTGTTCACCGCCGGCCGGAACATGATGAAGAAGAACACCGGTGGGAGAAAGTCCAAGGAGCCCGGGGAGACCGAATCCAAGAGTAAGTCTCACAGCGTGTCAAAACGTGATGGCAAGGAGCGGCACAGTCACAAGGAGTCCAAACGGGAGAGTAAGGATCGTAGCAAAGAGTATTCTTCTCACCTGCGCAACACCAAGGACAGGAGCTGTAGCAGCGTGGAGCCGCTGCCCAGGCGATATAGCAAAGACCAAGGTTGTAACAGTGTGGAGCCCTTGCCTATGAAACGGGACAGCAGAGACCGGGGTTGTAACAGTGTGGAGCCCTTGCCTATGAAACGGGACATCAGAGACCGGGGTTGTAACAGTGTGGAGCCCTTGCCTATGAAAATGGACAGTAAAGGCAGAGGTTGTAAAAGTGTGGAACTCCCGCCTGTCAGACGGGACAGTAAAGACAGAAGTGTCCATGGCATGGAGCCGTTACTACAACTGGACAGCAAAGACTCTCCCCGGAATGGTGTCGAGTCCAGACCAGACAGCAAAGACTCTCCCCGGAATGGTGTGGAGTCCAGACACGACAGCAAAGACTCTCCACGGAATGGTGTGGATTCCAGACACGACAGCAAAGACTCTCCCCGGAATGGTGTGGATTCCAGACACGACAGCAAAGACTCTCCCCGGAATGGTGTGGATTCCAGACGCGACAGCAAAGACTCTCCCCGGAATGGTATGGAGTCCAGACACGACAGCAAAGACTCTCCCCGGAATGGTGTGGAGTCCAGACACGACAGCAAAGACTCTCCCCGGAATGGTGTGGAGTCCAAACACGACAGCAAAGACTCTCCCTGGAATGGTGTGGATTCCAGACACGACAGCAAAGACTCTCCCCGGAATGGTGTGGAGTCCAGACACGACAGCAAAGACTCTCCCCGGAATGGTGTGGAGTCCAGACCAGACAGCAAAGAAAGGCTCAGCCACCAGAACCCACCAGAACTTCTACCCAGGCAAGATAGCAAAGACCAAAACAGGAACGGAATTGATTCGAGACATGACCGCAAAGTACGAATGGATCAGCCACCAGAGCTCCTACCAAGGCAAGATAGCAAAGACCGAACCAGGAATGGAATGGATTCGAGACACGAAAGCAAAGAACAAATGAACCAGCCACCAGAGCTTCTACCCAGGGAAGATAGCAAAGACCAAGTCAGGTACGGAATGGATTCGAGACACGACAGCAAAGTACGAATGGACCAGCCACCAGAGCTCCTACCCAGACAAAAATGCAAAGATTCACCCAGAAATGGCATTGAGTGCAGACGTaatgacaaagacagagacagggaaaGCTACAGCCTAGAGTCTAGACATGAGGGCAAAGAACAAAGTTACAATGGAATGGAGCCCTTCCCCTTACCCCGACAGGAAATCAAAGAGTCAGACAGAAACGGCCTTGAAGCCAGCAGGCGTAAAAGCAAGGACAGAAGCTGCAATGGCTCAGAGCTGCCCCCCCGGCGCGATAGCTACGGCAAGAGTGCCAATAGGGTAGATCTTAGGTGCGTCAATAAAGACCGGGTTGGTCATAGCTCAGAGGTCTTGCCCAGGCGTGATGTCAGAGATAGGGGGACCTATAGCGTTGAGCAATCAAAAGCACAAGCGAGGAACGGTGTATCAGGGCAACAACAATCATCGACTGCCACACCAACTCGGCATGGGAGACCTGCTGGCAGTCCGCCAATGGGGTTTGGATCTGGCAATACAGAGCTGAAACCAGCACGTACAAAGTATGGCCACTCCTCCTCTGCCCCAGTTACACCCTCTCCCTTAGGGACCCCACAGAGGCAAGCATCAGAGGCACAGATGCCCTGGAAGTGTGGGGACAGCACCATGCTGGAGCAGATCGAGAGGAAACGCTCCCTGTGCATGGAGATCCGTTCCAGGCAGCAGCCAGACAGGAACACCCCGGACAGGAACCTCTGTAAGCAGGACAGCAAGCCTACCCTCCCCATCTGGGGGAAGAGCAACGGAGCCAAAAAGATCCAGCCTCCCCCCTACCCAACACAAACCACCGTGTTCTGGGACACAGCCATCTGACAATAACCCGCTTGGCCTCACGCCCATCCTCCTTCTGAACTCTGTGCCTTCTGATTGGCCCTCTCCACATCAGAGGTGTCAGGGGCAGCCAATAAGAGCAGGGGGGGGGTCGCTGATGTCAAAGGACAATGGTGGTTACCATAGCAACATTTCTGGTTGTTCAGGTTGTCATTTTTTCTTATCACCAGTGATATTTGATATTTTTCTATTTTGTGTGACTTCGTATGAATAGATATTTTCTAAACAAAAAGCTATGAAGCAGCAAAAAACGATGTAGTTGTAGATCAATCCGATgtagttttttaaaaatgttttttgttttggtATTTAACATTTTAAAGCATATTCTATCAAGCATAATTCTTTATGCCAAGTGCTCAATTAATTTCCAATGCTAGACGTACTCTTTTGAATGTAGGATATTCTGACAGTCAACACGCTGTCACTGTTGAGGAGTTCAGTtgacatacaatacaatacctgtcaaaagtttggacacgcctactcattcaaaggtttttctttaattttttacaattttctaggttgtagaataatagtgaagataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437355 lncRNA downstream 1642 34568502 ~ 34570391 (-) True G2131643
TU2437327 lncRNA downstream 77389 34494119 ~ 34494644 (-) True G2131623
TU2437323 lncRNA downstream 88079 34483698 ~ 34483954 (-) True G2131619
TU2436949 lncRNA downstream 88647 34483109 ~ 34483386 (-) True G2131318
TU2436902 lncRNA downstream 162581 34405857 ~ 34409452 (-) True G2131281
TU2437439 lncRNA upstream 4898 34609030 ~ 34609835 (-) True G2131699
TU2437442 lncRNA upstream 15512 34619644 ~ 34619924 (-) True G2131702
TU2437483 lncRNA upstream 78146 34682278 ~ 34682482 (-) True G2131735
TU2437484 lncRNA upstream 80849 34684981 ~ 34685268 (-) True G2131736
TU2437565 lncRNA upstream 249428 34853560 ~ 34854537 (-) True G2131809
XM_036966669.1 mRNA downstream 90174 34425607 ~ 34481859 (-) True LOC110509050
XM_036966668.1 mRNA downstream 90176 34422172 ~ 34481857 (-) False LOC110509050
XM_021590008.2 mRNA downstream 250443 34304706 ~ 34321590 (-) False LOC110509056
XM_021590021.2 mRNA downstream 271405 34284268 ~ 34300628 (-) True vcam1a
XM_021590014.2 mRNA downstream 303016 34258200 ~ 34269017 (-) True zgc:110366
XM_036966648.1 mRNA upstream 109135 34713267 ~ 34728197 (-) True LOC110509072
XM_036966430.1 mRNA upstream 133330 34737462 ~ 34761420 (-) False gk5
XR_005040214.1 mRNA upstream 133330 34737462 ~ 34761420 (-) False gk5
XM_036966431.1 mRNA upstream 133330 34737462 ~ 34761422 (-) False gk5
XM_036966432.1 mRNA upstream 138121 34742253 ~ 34761423 (-) True gk5
TU2437347 other downstream 53904 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 53904 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 85857 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 513763 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 529468 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 1401357 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 1411930 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 1419648 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 1419658 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 1620081 36224213 ~ 36225379 (-) True G2132971

Expression Profile