RNA id: TU2437045


Basic Information

Item Value
RNA id TU2437045
length 1439
lncRNA type sense_over
GC content 0.43
exon number 3
gene id LOC110509061
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34621855 ~ 34632610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcagtgtaACCCTGTCCCCCGTCGCCCCCCCTCTCCGTGCCTGTCCCCCACTGTGTACCCCTGAGGATGTggtgaacctacagtacagtgcTGGAGGGTTGTTGTCCTATATCCAATGCACCACGCGCCGGGCCTACCAGCAGGTCCTCGAGGTCCTGGAGGTCGACATCCACCGCAGGGCTGGTCACTTGACCCTCGACATGGACATGACCCCTGACGATTCAGGCTTAGTGGACGCCTCGTCACTACGGCGACAGATTGTGAAGCTGAACCGACGTCTCCAGCTACTGGAGGAGGAGAACAAGGAGCGCTCCAAGCGAGAGGTGATTCTCTACTCCGCCACCGTGGCGTTCTGGCTCATCAATACCTGGATCTGGTTCCGGCGTTAGAACCGCACGGAACCCAATGACCAGGTCCTACACTGTCATTTTAACCAGAAATATCTCAATTCTATCTACAGATTGTAACACCAGATAATGTGATTGAATCAAAACAATGTTTTTCTGTAATATACTGGGAGTTACCGGTTAGGTACTGTTTTGGTGTAGCACAGAACATTTCAGACCAACCTTAGTTTGGTGATACTGTCCTCATTCTCTATTTGTAGAAACAGGAGTCTCATAAAATGTCCTTGTCCAGGGTGCAAGGGGATCcattacattttgttttgttttaaatgcactgttattaaaataaatactttttatGATCCGTGAAGTAATCCAACAACGTGTACACCGCCATCTTGTATATTTCAAGTCTTCTCACATTGATCGAGACGGGTGTCTGTCATCACTTTGGGGTGGACCCACCTGTCTGGAGCAAAACTCAATTGTGGAAGGGGAGGGTGATGGTATCTATGACAACTCCGACTGCCTAATCTGTTGGTTAAAGATATGTCTTGGCTGTCCCCATCAATCCAGATTGCCTGAATCAGTGAGGCTGATGAAATGACGAGGATACAGGCAAAGGAAACCAGTGTTGAGATTTCCCCAAATGTAAGCATTTAGTTGCAAGTCCTGTGTGAAGGGATTCATACCATTGCTCCATTTTATGGTGTGGATTGACTATTTATTTCTCTCCTACCTCGATGTTGGCAAGAAGCGGAGCAGGAGTCTAAATGTCTATTCATTCTCATCCAATGAAGTCTTTAGCACTGTATGACGTAATTGCCCAGTGTGGAAAAAATAGTTTGAACTCATATTTTATAGGATTAAATATGTATCTTGTGGAATATATGAGCTAAGAAACATTGCGACAAATGTGAGTATGTTCTGTATTAATCAGGCGCTGTTTTTGCTGCACAAAACTGGCATCTTTAGttgaaaaacattttattttattttgttttctttagtcaaacatttatttatgtatttttatgtatgtatttattttctttagtTGAACATGTATTTgtgcatttatttatatatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437016 lncRNA upstream 32304 34597245 ~ 34597472 (+) True G2131379
TU2437013 lncRNA upstream 34675 34594856 ~ 34595101 (+) True G2131376
TU2437010 lncRNA upstream 39634 34589889 ~ 34590142 (+) True G2131373
TU2437008 lncRNA upstream 40343 34589164 ~ 34589433 (+) True G2131371
TU2437007 lncRNA upstream 41997 34587522 ~ 34587779 (+) True G2131370
TU2437070 lncRNA downstream 32398 34664948 ~ 34665217 (+) True G2131410
TU2437073 lncRNA downstream 36727 34669277 ~ 34670019 (+) True G2131413
TU2437077 lncRNA downstream 55333 34687883 ~ 34688100 (+) True G2131417
TU2437079 lncRNA downstream 57955 34690505 ~ 34690704 (+) True G2131419
TU2437022 lncRNA downstream 80197 34712747 ~ 34715041 (+) True G2131384
XM_036966381.1 mRNA upstream 61424 34499546 ~ 34568352 (+) True LOC110508231
XM_036966250.1 mRNA upstream 220285 34352592 ~ 34409491 (+) False LOC110508236
XM_036966247.1 mRNA upstream 220285 34370862 ~ 34409491 (+) False LOC110508236
XM_036966249.1 mRNA upstream 220285 34370863 ~ 34409491 (+) False LOC110508236
XM_021590010.2 mRNA upstream 351075 34269061 ~ 34278701 (+) True extl2
XM_021590007.2 mRNA downstream 7469 34640019 ~ 34646660 (+) False agfg1b
XM_021590005.2 mRNA downstream 7472 34640022 ~ 34646660 (+) False agfg1b
XM_021590006.2 mRNA downstream 7472 34640022 ~ 34646660 (+) False agfg1b
XM_021590003.2 mRNA downstream 7473 34640023 ~ 34646660 (+) True agfg1b
XM_021590020.2 mRNA downstream 16301 34648851 ~ 34652522 (+) False fbxo36b
TU2437020 other upstream 24823 34603485 ~ 34604953 (+) True G2131383
TU2436600 other upstream 255766 34370861 ~ 34374010 (+) True LOC110508236
TU2436308 other upstream 560682 34038792 ~ 34069094 (+) False G2130749
TU2437076 other downstream 54721 34687271 ~ 34687640 (+) True G2131416
TU2437109 other downstream 69656 34702206 ~ 34783418 (+) True G2131426
TU2437711 other downstream 459149 35091699 ~ 35093034 (+) True G2131933
TU2438124 other downstream 1067296 35699846 ~ 35700235 (+) True G2132291
TU2438299 other downstream 1340889 35973439 ~ 35975132 (+) True LOC110508289

Expression Profile