RNA id: XM_021590006.2


Basic Information

Item Value
RNA id XM_021590006.2
length 2357
RNA type mRNA
GC content 0.52
exon number 12
gene id agfg1b
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34640019 ~ 34646660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTAATGTTGTCGAGTGGTCATTGCTGCCCACCAGTAGGTGTCAGTCACGCTGCGGTTAGCTGTCTAGTACACCTGTAAACCAACGAAGAAGAAACGTGTCTGTCCCACTAGACCTCTGCAAGGTGTCTGAACCACCGCTGTCGAGCCAAGACACCCCCTGCCTAGCCCTGGATTAATTTCTCCCACCTTTTAGCAGCCCCTTTTCTCAACCATGGCGACGAGTGCGAAGCGAAAACAAGAAGAGACGCATCTTAAGATGCTCCGGGAAATGACTAGCCAGCCCCCGAATAGGAAGTGCTTTGATTGCGACCAGCGCGGCCCGACTTATGCCAACATGACAGTGGGTTCCTTCGTCTGTACCACCTGTTCTGGCATCCTacgAGGCCTGAATCCCCCCCACAGAGTGAAGTCCATCTCTATGACCACCTTCACACTACAGGAAATTGAATTCTTACAGAAACACACCAATGAGGTTTGTAAATACATCTGGTTGGGGCTGTACGATGACAAGACATTGGTTGTTCCAGACTTCCGTGAACCACAGAAAGTAAAAGAATTCCTCCAGGAAAAATATGAGAAGAAAAGATGGTACGTCCCTCCAGACCAGGCGAGGACGGTAGCCATGGCCCAGGCCTCCAAGTCGGGCTCCTcagccagcagcacagccagcaCCCCGGAGGTCCAGCCCCTGAAAACCCTGCAGCTCAACAAGACCCCCCTAACACGTCAGTCCCCGATGGTGGTTCGTTCCCTGGCCCATCCCATAGTTCAGGAGAAGAAGTTTGACCTCCTTACAGACCTGGGCGGAGACATCTTTGCCGCTCTGCCCTCTCAGGCTGCCAGCAACGCCAATTTTGCCAACTTTGCGAATTTCCCCAGCCAATCAGTGACTAAGGTTAACTCAAAAGCTGACTTTGCCAACTTTGAGATGTTTGGCAACTCTGGAGTACCTCCGCATTTCAGGACCTCACCCCCCTCTCAGTCGTTTGCGTCAGgGCGAGGTGTCCCAGTGCCGTCAGCGGCTGGTGCTGTACCAGCCCAGTCCCAGCTGGGCACCTCGGCAGAGGACCGCTACGCTGCCCTGGCTGAGCTGGACAACGAGCTGAGCTCCTCTGCCCCCACAGGGAGTAGTGTCCAGGGTGAATCTAGGAATTTGTTTGGAGCTGTGTTGGGAACCTCGCCTGCCCAGACTCAGCCAGTCTTACCCAACATGCAGCAAGGCTTTGGAGCCGTCTCATCCAATAACCCatttgttgctgctgctgccccaGATATGGCTACCAACCCCTTCCAGACCAATGGTATAGCACCGGCcgcagCCTCGTTTGGCACAGGCTCTATGAGTATGCCTGCTGGCTTTGGGAATGCCTCCTCTTACTGCCTCCCGACCAGTTTTAGTGGGACCTTCCAGCAGCCCTTCCCTGGCCAGGCCCCCTGCCCTTACCCCCAGCCAGGGGCCTACCAACCCCAACAACCTAATGGCCCTGGTGGATATACAGTCTATGGACAGACCAAGCCCTCCATGACCCCCTTTGGGCAGCTCATGACTGGTCCTGGGATGACCAATAACCCATTCATGGGGAGTATTTAATAGCGGGAGCCCCGGCCGGATCCTACCCCTCTGGAAGCTCCAACACCAACCCCTTCCTGTAGCGCGCCTCCCTCCCCGTCGtcaccaccagagggcagcaTACAGCACCTATTCAATGTACCGGCTCAGTCACACCTTGTGACTTGACAGTACATTTCTGAAACTCTGAAATCAAGATTTTCTTAACTATGTTTACGACACTATGAAGGACTATGGGACTGGGGACTGCCCTGGAACGATGCCCTGGGACTTATACGGTCTCTATACATATTTTGTAGTTTGTTATGTTTGACAGTATTATTGTGCATGTCGGCATTTGTATTCACGTTTAAAATAAATGTTATGTATAATTAGGACTTGACGTGGGCGGAGGACATTGCTGGTGCCACTACAATGTTTCTACTGGTGTGTTTAtatgataactaacatggttgtatacaacAGGTCTAGGAGGGAACTGAGGTGACCAAGATTTTTTTCTCATTGGGAACGATGATGATTAGATGTTGGTGAAGAATCAGGCTGGTGAACAAGGTGTCACCGGAGGCCATATTCGGTATCATTTAATGAATTCCGTGTTAAAGAAACAATGTATTGTGGTTTCAATTGGCACGACGCCTCTGCCTGCAGTTACGGTGTCCGGGACTGTTATTTGGTGCATGATTAATACCACTATTACTTGGGGTGCCACCTGGGGTGTGTTCAGCAGGGTACAAGATTGTGTAGcaggacaccccccccccccccccccccccaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437045 lncRNA upstream 7472 34629776 ~ 34632550 (+) True LOC110509061
TU2437016 lncRNA upstream 42550 34597245 ~ 34597472 (+) True G2131379
TU2437013 lncRNA upstream 44921 34594856 ~ 34595101 (+) True G2131376
TU2437010 lncRNA upstream 49880 34589889 ~ 34590142 (+) True G2131373
TU2437008 lncRNA upstream 50589 34589164 ~ 34589433 (+) True G2131371
TU2437070 lncRNA downstream 18288 34664948 ~ 34665217 (+) True G2131410
TU2437073 lncRNA downstream 22617 34669277 ~ 34670019 (+) True G2131413
TU2437077 lncRNA downstream 41223 34687883 ~ 34688100 (+) True G2131417
TU2437079 lncRNA downstream 43845 34690505 ~ 34690704 (+) True G2131419
TU2437022 lncRNA downstream 66087 34712747 ~ 34715041 (+) True G2131384
XM_036966788.1 mRNA upstream 7412 34621855 ~ 34632610 (+) False LOC110509061
XM_036966787.1 mRNA upstream 7412 34621856 ~ 34632610 (+) False LOC110509061
XM_036966785.1 mRNA upstream 7412 34621857 ~ 34632610 (+) False LOC110509061
XM_036966786.1 mRNA upstream 7412 34621860 ~ 34632610 (+) False LOC110509061
XM_036966381.1 mRNA upstream 71670 34499546 ~ 34568352 (+) True LOC110508231
XM_021590020.2 mRNA downstream 2191 34648851 ~ 34652522 (+) False fbxo36b
XM_036966931.1 mRNA downstream 2191 34648851 ~ 34652522 (+) True fbxo36b
XM_021588662.2 mRNA downstream 6469 34653129 ~ 34654349 (+) True LOC110508234
XM_021590024.2 mRNA downstream 45635 34692295 ~ 34700231 (+) True LOC110509067
XM_021590027.2 mRNA downstream 120114 34766774 ~ 34769328 (+) True LOC110509070
TU2437020 other upstream 35069 34603485 ~ 34604953 (+) True G2131383
TU2436600 other upstream 266012 34370861 ~ 34374010 (+) True LOC110508236
TU2436310 other upstream 570928 34038792 ~ 34069094 (+) False G2130749
TU2437076 other downstream 40611 34687271 ~ 34687640 (+) True G2131416
TU2437109 other downstream 55546 34702206 ~ 34783418 (+) True G2131426
TU2437711 other downstream 445039 35091699 ~ 35093034 (+) True G2131933
TU2438124 other downstream 1053186 35699846 ~ 35700235 (+) True G2132291
TU2438299 other downstream 1326779 35973439 ~ 35975132 (+) True LOC110508289

Expression Profile