RNA id: XM_036966648.1


Basic Information

Item Value
RNA id XM_036966648.1
length 2805
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110509072
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34713267 ~ 34728197 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGCCATTCTCTCATTTTCTCAGGCAATGGAAAACTGGATAAATGCCGCGTTATTCTAGCGTGTCTACAAATCTAGGCTACACTGTCCAAGCCGTTCTTCTATTGTAACCGTACCCGTACCGCATTGAGTAGCGGAGCGAGGCTGACGCTAGTTGCAGAAAACGTCACAGATTTTTCgctttttaattattttatttttttaacaaagcGCAATCTTGCCTCACTCTGCCGCTGGACTCCATTCCAACCACTGATCCAATCACATACCGCCTACATCCCTGATTTCTCCTCATCCTATCGCCCGCTGTTCCTCGTATTTTTAATAAGGAAAAATACAAATTTCCACCATGGCAAGCAACGAAGTCAAACCGACGGCGAAAGAGGATGAGAATGCTGGAAACTGGAAAGATTCCATCTTCAACCCAAGGACCGGGGAGTTTTGTGGGCGCACAGCGAAGAGCTGGGgcctCATCCTCCTGTTCTACTTGGTGTTCTATGCTTTCCTGGCTGGGATGTTCGTCCTCACCATTTGGGTCATGCTGCTGACGCTAGACGACTATGTGCCAAAGTACCGCGACCGGGTGCCACACCCAGGATTGGTCATCAGGCCAAAACAATTGGACATGCTGTTTAACAGATCACAACCTCTCCAGTTCAGCACGTATGTCCAGACCTTAGAGTCTTACCTGCAACAGTACAATGACACGGAGCAGGAGAGGAATGAGGCGTGCACGGCAGGGGTCTACTTTGAGCAAGAGGGAGAGGTGGGCGAGCAGAGGAAGGCCTGTCAGTTCAAGAGGAGCTCTCTGAGCCGCTGCTCCGGCCTGTCCGACTCTACCTTCGGTTACGCTGAGGGGAGACCATGTGTCCTCCTCAAAATGAATAGGATCATTGGGCTGAAGCCGCGTGGAGATCCCTATGTCAACTGCACGGCAAAGAGGGACAACCCCATACAGATGCAGTACTTCCCAAGTGAGGGACGCTTCGATAAAATGTATTTCCCTTACTACGGCAACAAACTTCATGAGAGGTATGTGCAGCCGGTGGTTGCTGTTAAGCTGTTGCTGAACAAGGAGGACTACAACACGGAGCTGACCATTGAATGCCGGATTGAGGGATCCGACCTGCGCAACAACGACGACAGAGACAAGTTCCTAGGCCGTGTCACCTTCCGAATCACAGTCAAAGAGTAGTAGGGAGTAGTGCGGAGGAGGCTAGTGTGGAGAAATGTGGTTCTTACTCCTCCCGGAAGATTCCTGGTAGATTAAGATGGGCCTAATTCCAAACCAATCCCTCCACCCTCACTCCAGATACTAGGCGAGGGACATTCAAATCTGGTCTTTTTCACATCACCTTGGTAATTCATTGATTGGCCAGATAATCTACTCACCTGTTGTTACAGGTCAGTCTCTAGCTAGGCAGGATGGGGAAGGATTAAAACCAGCAGTTCTGTGAAACCTGAATCTCAGATTTGAATACCCTTCTCTTGGGCTCTTGTTGACTCCATCTTGTATTTCTGATAGGGTTGGATATGTGTAAGCATAGCAAGAGTGCTAGATGAAGCAATTATCATATCATAGCTGATGCCAATCCATTCCTTTCAGATCTACAGTGCATCACACCCAAAAAGGGCCTAGACTAGTGCCTACAAATGTAGGAGCTTAATTTGATCAGTCTTTCGTTGCTGAGAATTTAGCAGGAAATATTAACAAaggtttctaaagtttgtaatttccactttgaaatttccgatttgatttgccctaacgaaaaacgTATCCAGCCATACAAAAATtctattcattataatccactTAATACATCACATTTCCTCTTCTGCAGGATTATCTCCCTGctatagcaaactggctcaaattaagatcctacatctgtgatGGTAGGGGGTGAGAGATCGGTGTGCGATTGGATCAAAAGGATAGGGTAGTGATGTCATCAATTTTCAACTTATCTCCTGGAAAAAGCGTTAATCGTGCCAAATTTAATGGAACATCAAGTTCCCTTGTTTACTTCTATGTTTACTCTAGTacaggcctgggcaactccagtcctcgcgGGCCTGATTGGTGGTCACACTTTTGCCCCTAGACCCAACTAACACctctgactccaataatcaactaatcatgatcttcagttaaaAATGAAATGAGTTTACATCAGCTGTGTTTTCTAGGGATGGAGGGAAAAGTGTAACACctatcaggcccccgaggactggagttatCCACCCCTGTTTAGGATGGCGCATATCTTTGTCTTCTCTTTCATTATGTCATTCTAGCAAGAGTCTTTTCATGACTCACCAACCTAACGGCCATCAGACCCTTCTATTAGTGGGCTTTTGTTGTCTGACCCAGTGCTCTAGTGATGATCTAGGCTCAGATCTTATTTTCTATTCAGATGGTCTAGATTGGAGCTTAGATGTGGTAAACTGAACCTAGATCAGGGCTTTAGTGCCAAGGGTTGGATCAACTGTTAGTAGTTAGCCTCAATCAGTATTTAACCATCAGTCATCCACTGTCAATACAACCATGTTTTAAGTTGACCCTCTCATCTGAAAACAGAACAAATAATTATTCCTCAACATCACATCCCATAGATAGAGTCAACCCTAGTGAAACACTGTCGAACCCAGATGCCCTCTACAATTACATGTAATTTAGAATCCTTTTCGTCTTGGGACCACAATttgatattataatattataataggGAACTgtagataggtgtgtgtgtgtggtgtggtctgACCACAACCCAGTGGTGTGCCGTCTGTCTGTCCGg

Function

GO: NA

KEGG:

id description
K01540 ATP1B, CD298; sodium/potassium-transporting ATPase subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437484 lncRNA downstream 27999 34684981 ~ 34685268 (-) True G2131736
TU2437483 lncRNA downstream 30785 34682278 ~ 34682482 (-) True G2131735
TU2437442 lncRNA downstream 93343 34619644 ~ 34619924 (-) True G2131702
TU2437439 lncRNA downstream 103432 34609030 ~ 34609835 (-) True G2131699
TU2437436 lncRNA downstream 115744 34597255 ~ 34597523 (-) True G2131696
TU2437565 lncRNA upstream 125363 34853560 ~ 34854537 (-) True G2131809
TU2437574 lncRNA upstream 138468 34866665 ~ 34867243 (-) True G2131816
TU2437593 lncRNA upstream 146857 34875054 ~ 34875690 (-) True G2131824
TU2437605 lncRNA upstream 163688 34891885 ~ 34892090 (-) True G2131836
TU2437620 lncRNA upstream 208311 34936508 ~ 34945229 (-) True G2131851
XM_036966882.1 mRNA downstream 109135 34572033 ~ 34604132 (-) False LOC110508232
XM_036966883.1 mRNA downstream 109135 34572033 ~ 34604132 (-) True LOC110508232
XM_036966669.1 mRNA downstream 231408 34425607 ~ 34481859 (-) True LOC110509050
XM_036966668.1 mRNA downstream 231410 34422172 ~ 34481857 (-) False LOC110509050
XM_021590008.2 mRNA downstream 391677 34304706 ~ 34321590 (-) False LOC110509056
XM_036966430.1 mRNA upstream 9265 34737462 ~ 34761420 (-) False gk5
XR_005040214.1 mRNA upstream 9265 34737462 ~ 34761420 (-) False gk5
XM_036966431.1 mRNA upstream 9265 34737462 ~ 34761422 (-) False gk5
XM_036966432.1 mRNA upstream 14056 34742253 ~ 34761423 (-) True gk5
XM_036966438.1 mRNA upstream 45558 34773755 ~ 34806813 (-) False LOC110509071
TU2437347 other downstream 195138 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 195138 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 227091 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 654997 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 670702 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 1277292 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 1287865 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 1295583 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 1295593 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 1496016 36224213 ~ 36225379 (-) True G2132971

Expression Profile