RNA id: XR_005040214.1


Basic Information

Item Value
RNA id XR_005040214.1
length 3849
RNA type mRNA
GC content 0.47
exon number 17
gene id gk5
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34737462 ~ 34761423 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCAGGATGAAGTTGGTGAAGGGCAATTGCAGAACATTTGCAGTCAAAACttcatgacctttgatcacatgaTTTCTGTAAAGTTCATGCAGTCGATTTGTAGGTGTAAATCGGATTATTTTTTtataatgcaacacactttgaaaggcATGTGAACAACGATGGTTACCGATTTGACAAAAGTGTTCCGCTCGAACACACATATTGACTTTCCCCtcccccaaaccccggtctggtctctCGAATCTGCTTCTCGACTTGTTTCCGGAATTATTGTGATGTTGCGCCTCTCGGTTAGAAATCTGTGCTACTGAgtttgagaaacacacacacccacaacattGTTTTATTAGGCCTACACCATTATGAAATTATAAAAGTGCTGTGAACTAATTAAGATATAATTTCGCCAAAACCTTGGCAGGTTGAACGGAATTGGGTGGGTGGTCGGGTGTCTTTtaaattgttgtgaaattgtcaCGTATGCTGTATTTCGAAATATTCCGTGGATTGGATGGTTACCGGAATAACTGGAATTTAAACAATGAGTCACCCGATTTAACAAAAACTGACCTTTCTCCACATATCTACATTGACGAAAGGATTCAACTAGGACAGGTGCCTTCTCCAGCCCACTCTGTGCTATTGCCTAGAGGGTGAGGAGACAGTTGTGACAATCGCTTTCACGATATGTGAGGCAAAGGTCCGAAGGAGGAATCGGTCAAACTGTTGCTGAACACAAAGCTCGTGTTACTATGGAGATTCAGAGGAACGGATTCAAAAGAGAAAGTTACATTCTCTCTGTGGACGTGGGGACAACATCGATCAGATGTCACGTTTTCGACAAGGAAGCCCAGATTCGAGGATCATGCATCACCAAGGTGAATCTCTTGTATCCTGAACCGGGCTTGGTCGAGTTGGACCCCGAAGAGCTGTGGAGAGGATTCGTTAAGGTGGTGAATGGTGCTGTGCAAGACTCAGGTTTACAGATGCGTCAGATGGAGACCCTGGGCATCTCCACTCAGAGAGGCACCTTCACCACGTGGGACAGgaaaacaggAGTTCCCTTTCACAACTTCATCAGCTGGCAGGACTTGAGGGCAGTGGAGCTGGTGAGGTCCTGGAACAACTCCTGCACCATGAAGGCGATCCACGGCGTTATGATGGTGCTGCACTTCCTGTCCAAAAATAAGCGCTTTCAGGCGGCCAGCCTCATAGTCTTCTCCACCCAACACGTCACCTTCCGCCTGGCCTGGGCCCTTCGACACTGGAAACAGTTAAGTCAAGCAGTTGCAGAGGGCAACTGCTGCTTTGGGACGATAGACACCTGGTTGCTTTATAAGCTCACAAAAGGATTGGTCCATGCCACAGACTACTCTAATGCCAGTGCCACTGGGATGTTTGATTCGTACCAGTTGTGCTGGAGTGAATTCCTCTGCTGTCTCGTCTCGctgcctctctccatcctccccaaaGTACTGAACACTGGTCACCGCTTTGGCTCAACAGATCCCTCCATCTTTGGGGTGTCGATCCCTATTATGTCTGTTATGGCAGACCAGCAGGCGGCCATGTTTGGTGAGTGCTGCTTCGACATCGGTGATGTGAAGATCACCATGGGAACGGGCACCTTCATGAACATCAACACTGGGAGCGAGCCACACACATCTGTGGCCGGTCTCTACCCTGTTGTGGGGTGGAAGATCGGCCCAGAGGTGGTGTATCTAGCAGAGGGCAATGCAGCAGACACTGGCACAGCCATTAAGTGGGCACAGGAGCTGGAGCTGTTCTCAGATGTACGGGAGACAGATGCCATGGCCAACAGTGTGGCCAACTCGGACGGTGTGTGCTTCGTTCCCTCGTTTAGTGGCCtgcagGCTCCTTTAAATGATCCCAAAGCATGCGCCTCTTTCATGGGCCTAAAACCATCCACAACCAAGAGTCACCTGGTCCGAGCCATTCTGGAGTCTGTTGCATTTAGGAACAAGCAGCTCTATGAGACGATGCTTAGAGAAACACACATTCCCATCAGGAAGATCAGGGCGGACGGTGGCATTTGTACCAATGACTTTGTCATGCAGCTGACGGCGGACCTGTTTGGCAGGAAGGTCGCTCGGCCGACCCAACACGAAATGTCCTGCCTGGGGGCAGCCTTCGTTGCTGGACTGGAAGTTGGCTTCTGGAAGAGTCAGGACGAGCTGAAGAAACTACAGCGCACTGACCGAGTCTTCCTACCCCGGAATTTGTACAGAATGGGTGATGGGGGCACGGAGGGCGAGTACACACCCATTCTGCAGAGATGGGAACAGGCGCTGAAACGCTCCATGAACTGGTACGGCAATCCCTGAGGCTCGTAGGACAGTGAGACGGACGTAGGCTTTACAGTTGGGTGGATGCACAGACGGGACCTCTGGTGCTGCTAACCAAAGCCCAATGACTGCCTCTATGATGTCTGACCTCTCAATAGTATCTCTCTGTCCATGGGTTGGACAgatgggaaaatacatttttgtttgtttgttaaatCGTATTATTTGAAGTAAACACTTATCTGACATGACTAGATCTGTAAGATGTAGTATAATCCAACTGTGTTATATTAGTGACTATGTCAAGGAAGGAAGGATAGGACGAAGGAGGATGCATTTGACAAATATTGGAACTGGGTTTTAGGACCGAGTGGACCTCTAATGCTGCTGAACCTTATGACCTTTTGACTTGAGGCCCTGGCCAGGCGCTCAAGATTATTTTGACCCCATACAACCTTACCTAACTCATTACAGCACACGAGGAAAATGTTTTTTAAACGTTTCACGACTGTGAACTAAACTGTCTTTCTCGTAGTAGTCTCTCCCTGTTCCAGTGTTTTCATTGTGTCTGATGGACCCCACCCAGGTGTCTAGTCTCTCCCTGTTCCAGTGTTTTCATTGTGTCTGATGGACCCCACCCAGGTGTCTAGTCTCTCCCTGTTCCAGTGTTTTCATTGTGTCTGATGGACACCACCCAGGTGTCTAGTCTCTCCCTGTTCCAGTGTTTTCATTGTGTCTGATGGACACCACCCAGGTGTCTAGTCTCTCCCTGTTCCAGTGTTTTCATTGTGTCTGATGGACACCACCCAGGTGTCTAGTCTCTCCCTGTTCCAGTGTTTTCATTGTGTCTGATGGACACCACCCAGGTGTCTAGTACTGGAATGGAGGAAACTGAACCAAACCATGTGACCTCTGGTGGTTACTATCCACCCATGCTAGAACCAATGGATTCCCATTGAGACCAATACTCTGTGTATTTCCAGTGAGACCATAAATACACAGTTTATGAGATACAAGATTGGCTCACCTTCTGTGGgccttcatatatatatatatatatttgaattgttttctttaaaaaaaattggaaTCATAAACTATAAACAAATTATATTCATTCTTATGGTCATGAATTGAATGAATGGTCCCTTCTCAGAAATCAGCAGTAACTGCTCTCTACGGTGTACTATCTCTATTGCCTGGTTGGttacccagactccttgctctGACCAAACGCTTACGCCAGGCCTGCTgacgttagtttcttctccgagtctggatctgagtacctccctgACAAGTTCTAGAATGTAAACGCATTTGAACTGTTCTGACCCTGAATAAAAACCTACTTGGACCTTAaggtggctggtagcctagtggttagagtttgggccagtaacccaaaggttgctagatcgaatctatgatctgacgaggtaaaaatctgtcgttctgcccctgaacaaggcagttaacccactgttcctggaccgtatttgtaaataagaatttgttctagtaaaataaataaagcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437484 lncRNA downstream 52194 34684981 ~ 34685268 (-) True G2131736
TU2437483 lncRNA downstream 54980 34682278 ~ 34682482 (-) True G2131735
TU2437442 lncRNA downstream 117538 34619644 ~ 34619924 (-) True G2131702
TU2437439 lncRNA downstream 127627 34609030 ~ 34609835 (-) True G2131699
TU2437436 lncRNA downstream 139939 34597255 ~ 34597523 (-) True G2131696
TU2437565 lncRNA upstream 92140 34853560 ~ 34854537 (-) True G2131809
TU2437574 lncRNA upstream 105245 34866665 ~ 34867243 (-) True G2131816
TU2437593 lncRNA upstream 113634 34875054 ~ 34875690 (-) True G2131824
TU2437605 lncRNA upstream 130465 34891885 ~ 34892090 (-) True G2131836
TU2437620 lncRNA upstream 175088 34936508 ~ 34945229 (-) True G2131851
XM_036966648.1 mRNA downstream 9265 34713267 ~ 34728197 (-) True LOC110509072
XM_036966882.1 mRNA downstream 133330 34572033 ~ 34604132 (-) False LOC110508232
XM_036966883.1 mRNA downstream 133330 34572033 ~ 34604132 (-) True LOC110508232
XM_036966669.1 mRNA downstream 255603 34425607 ~ 34481859 (-) True LOC110509050
XM_036966668.1 mRNA downstream 255605 34422172 ~ 34481857 (-) False LOC110509050
XM_036966438.1 mRNA upstream 12335 34773755 ~ 34806813 (-) False LOC110509071
XM_036966439.1 mRNA upstream 12335 34773755 ~ 34806814 (-) True LOC110509071
XM_036966649.1 mRNA upstream 51297 34812717 ~ 34824529 (-) False LOC110509075
XM_036966652.1 mRNA upstream 51297 34812717 ~ 34824529 (-) False LOC110509075
XM_036966651.1 mRNA upstream 51297 34812717 ~ 34824535 (-) False LOC110509075
TU2437347 other downstream 219333 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 219333 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 251286 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 679192 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 694897 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 1244069 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 1254642 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 1262360 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 1262370 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 1462793 36224213 ~ 36225379 (-) True G2132971

Expression Profile