RNA id: XM_036966439.1


Basic Information

Item Value
RNA id XM_036966439.1
length 2813
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC110509071
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34773755 ~ 34806814 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattaatatttagTCATATTTAGGGAGATTTATATTTTCCACAAATGTTGTGATAAGCTTTATTTGTATTTCGGCAACTATATAATTTGGATTGGTGTGTCATTGATATGCAATCttgccttcttttttttttttgatgtgGCATACATCGGCCTAAATAACAATATAAATGATCCATTGATTCAGGCTAGCTATATAgcttcaaaatatgttttatctcACGGAATCATTGCATTCATTCTTACAGCTAAGCATTTACCCCGGTTGTTAATGTAACATATCCGGTTGACCTTTACAATTAGCCGCTTTCATTTCGCGAACAAACTGAGTGGACGGCTGGACCGGATAGAAGGAACGAGAATCAAAGGGCATATCGGAAAGGATCCTCTAAACACATTGTTGGCCTGTCTAGAGAGGGACATTGGGAATGTTTTCATTGTCAACATCCGTCCAACCACAGGTCACTGTCCCCCTGAGTCACCTGATCAATGCTGTCCAATACCTGAAGACTGCAGTGGGCAGCAGCAATGCCGCTGCTAAACCTCAGCATAGAGAGCATGCCTTGGAACAGGACTCGCAGAACACAGAGGCCACGTGGACCCTGAGGGACCTGGGCCTGTCTGACCTGGGCGTGGGGCAGCTGGACGAGCTAATAAGCGCTATGTTACCACGTCTGAGTCAACAGGGGGCGCTGTCCTCATCCAGCCCCAGCCAACAGGCCTGGGggacctctcacctctcctcacatTCCTTCTTCCACAACAAGCATGGGTTCTCTGGTGGTAAAATGGGCACCTCCTACCCTGTTTTCTGCAAACAGATCCCTTCCCCTCTTCAGGCAGTTTGTACAGAGCTCCGCTATTGGCCAGTGTGGATCCAGAACAGAGGCTTTAAAACTCTAGGGAAACACAAGCGACTGCAGGCAGGCTTTGAGCGTCCCATGGAATCAGATGGCTTTACACCCTCCTTTATGAAGGGCCTCCTGATGCGTGATAAGGGGATGGAGGTGGAAACCTTGGACAAGCTTATGAAGAACAAGAATATTCCTGATGGGCAGCAAGATTCTTTCAAGACCGGATTTGCTGAGGGCTTCCTGAAATCCCAAGCTCTGACACAGCGCACACAAGACTCTCTGAGGAGGACGAGGCTGGTCCTGCTGGTCCTGCTGCTCCTGGGACTCTACGGCCTCTCCAAGACGCCCTTCCTATCGGGCCTGGACTCAGCGGTGGACCCTGTCCACATGAAGAACGTGACATTTGAGCACGTCAAAGGGGTGGAGGAGGCCAAGAACGAGCTGCAGGAGGTGGTGGAGTTCCTCCGGAGCCCAGAGAAGTTCACCGTCCTCGGAGGGAAACTGCCGAGAGggatCTTGCTGGTTGGCCCTCCTGGTACTGGGAAGACTCTGTTGGCCAGAGCTGTGGCTGGAGAAGCCAACGTACCATTTTATTATGCCTCTGGCTCTGAGTTTGATGAGATGTTTGTGGGGGTTGGAGCCAGTCGCATCAGGAACCTCTTCAAGGAAGCCAAAGCAAACACGCCGTGCGTGATCTTCATTGACGAGTTGGACAGCGTCGGAGGAAAGCGGATCGAGTCTCCCATGCACCCCTACTCCAGACAGACCATCAACCAGCTACTGGCTGAGATGGACGGGTTCAAACCAAACGAAGGGGTCATTATCATTGGAGCGACAAACTTCCCAGAGGCTTTGGATAAcGCTCTGATTCGACCGGGACGTTTCGACATGCAGGTCACCGTTCCCAAGCCAGATGTGAAGGGGCGCACAGAGATCCTCAACTGGTACCTTAGGAAGATTAAAGTAGACCCTGATGTGGAGGCTGGGATCATcgccaggggaacagtgggcttCTCCGGGGCCGACCTGGAGAACCTGGTCAACCAAGCGGCTCTGAAGGCGGCGGTGGACGGCAAAGACATGGTGACCCTCAAAGAGCTGGAGTTCGCCAAGGACAAGATCCTCATGGGCccagagaggaggagtgtggagatAGATAAAAAGAACAAGGAGATCACAGCGTACCACGAGTCTGGCCACGCTATCGTGGCGTACTACACCAAGGATGCCATGCCCATCAACAAGGCCACCATCATGCCCAGAGGACCTACTCTAGGTCATGTGTCCATGCTCCCAGATGATGACCGCTGGAGCGAGACGCGTGCTCAGCTGCTGGCCCAGATGGACGTCAGCATGGGAGGCCGCGTGGCAGAGGAGATCATATTTGGCAATGAGTTCATCACCACTGgTGCATCAAGTGACTTTGATGCTGCCACCAGAATTGCAAAAATGATGGTGACCAGATTTGGTATGTGTGAGAGGCTGGGTGTCATGACCTACACTGACCAAACCAAGCAGAGCCCAGAGACACAGGCTGCCATCGAACACGAAGTCAGGAAACTTTTAAAGGATTCGTACGAGCGGGCCAGGGCTCTCCTCAAGTCTCACGCCAAAGAACACCAGAACCTAGCCAACGCCCTGTTGCAATACGAGACGCTGGATGCCAGAGAGATCAAGATGGTCCTGGAGGGCAAGGGCCTGGAGACAAGATGAGACTTCCAAGGGTGGAGGTGTCACGGTTTAATTTGGGAGATCGGGTGAGGGGTGGGAAGAAAATAAATCACTGTCCACGGTGATTTCACAGTCTACGCAAACAGAGCTACGGAGCTGTacgtgtgtatgtacagtgtctTCAGGAAATAttcacagcctgaatttaaaacggattaaattaagtttttgtgtcactggcctacacacaataccccataatatataaaagtggaattatgtttacaaa

Function

GO: NA

KEGG:

id description
K08955 YME1; ATP-dependent metalloprotease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437484 lncRNA downstream 88487 34684981 ~ 34685268 (-) True G2131736
TU2437483 lncRNA downstream 91273 34682278 ~ 34682482 (-) True G2131735
TU2437442 lncRNA downstream 153831 34619644 ~ 34619924 (-) True G2131702
TU2437439 lncRNA downstream 163920 34609030 ~ 34609835 (-) True G2131699
TU2437436 lncRNA downstream 176232 34597255 ~ 34597523 (-) True G2131696
TU2437565 lncRNA upstream 46746 34853560 ~ 34854537 (-) True G2131809
TU2437574 lncRNA upstream 59851 34866665 ~ 34867243 (-) True G2131816
TU2437593 lncRNA upstream 68240 34875054 ~ 34875690 (-) True G2131824
TU2437605 lncRNA upstream 85071 34891885 ~ 34892090 (-) True G2131836
TU2437620 lncRNA upstream 129694 34936508 ~ 34945229 (-) True G2131851
XM_036966432.1 mRNA downstream 12332 34742253 ~ 34761423 (-) True gk5
XM_036966431.1 mRNA downstream 12333 34737462 ~ 34761422 (-) False gk5
XM_036966430.1 mRNA downstream 12335 34737462 ~ 34761420 (-) False gk5
XR_005040214.1 mRNA downstream 12335 34737462 ~ 34761420 (-) False gk5
XM_036966648.1 mRNA downstream 45558 34713267 ~ 34728197 (-) True LOC110509072
XM_036966649.1 mRNA upstream 5903 34812717 ~ 34824529 (-) False LOC110509075
XM_036966652.1 mRNA upstream 5903 34812717 ~ 34824529 (-) False LOC110509075
XM_036966651.1 mRNA upstream 5903 34812717 ~ 34824535 (-) False LOC110509075
XM_036966653.1 mRNA upstream 9453 34816267 ~ 34824529 (-) True LOC110509075
XM_036966925.1 mRNA upstream 61699 34868513 ~ 34888930 (-) True LOC110508238
TU2437347 other downstream 255626 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 255626 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 287579 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 715485 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 731190 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 1198675 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 1209248 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 1216966 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 1216976 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 1417399 36224213 ~ 36225379 (-) True G2132971

Expression Profile