RNA id: XM_036966434.1


Basic Information

Item Value
RNA id XM_036966434.1
length 3441
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110509069
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34796732 ~ 34803585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAAACCACGCCAATCGTCATGAAACCCCACAGAAGAACAAAGTAGAAGAAAAATATACTGATAACGAAGCCATTTTATCTGTGGTAGATTCGGaaatgaaaatatgtatttttacattattttttcAAAGAGTATAATTTGCATTTAGTTCGATGAACCTGGGGTGGACCGGAAGCGGTTGCAAATTCAAATTCGGTTGTAAAGATTAAGCTTTTTTTTGTCTCCTCAGACGTGGTGGCTAACAACAACGACAGAGAACCATTTATAGAGCTTCATGTGGTGAAACGAAGGATTTTCCCAAGTGGGTTGCACCTGAAGATCACAGGTCCATCGGAGAATGGCACTGAACCAGGATGAAATAATAGAAGGAATGGAGATTAAAATGGAAGTGGAAGAAGTGGCAACCAATTCTGAAGTGCAGGTAGATGTTGCTGGCAGTGAAGAGTCAGATAAAGCCTTGTCCAATAGTAACCTCGCAACACCTAAAAGGGGGCGGGGTAGGCCACCCAAATATGGATCGGCCTCCAAGTCAGATAATGCCTTGTCTAATTGTAACCCCTCAACACCTAAGAGAGGTAGACCTAAAGGATCAGTGTTTATGAAAACCAAGATGCTGAAGGTGATCGGCCTCGCGGCGGCTTGCCTACCCCGAAAACCAGATGACCCCTCCCCAAAGAAGCGTGGCCGACCCCGAAAAAAGAAGCGTGGCCCGCCCAGTAAAGTTGAATCGACAAGGAAGAGCCTAACACCCATGGGGGAAGAGGATAGAAAACTGGAAAGCCAAGCAAGGCGGTCCCCCGGAAGGCCGCGTATCTATCCACGCATTGATTCTCCAGTCACTGAGCCCAGGGGAAGAGGTCACCCACGCAAGACGGAGGATGCCACCAAGTCCCCCATCTATGATGGTCCCCCACGGAAAAGGGGCCGTCCCCCTGGTGCAGCAAACAAAGTTaagaggggggcagagcaggaTAAGGACAACGGTGAACCTCCAGTCAAACGCTCCTTCCACGCCAAAGACAAAACAGAGGAAGCAGGATTTCCACCAGTCGAAGAAAGTGATCAGGAAGATGAAACAGGGAGGGTGGATCAAGAAAGTGAAAAGTGGAAGGTGGAATATAGAGAAGACCCCAAGAAGCCAGTTAGCCCCAGTGACCCCACTAGCTTTCTCTGGGCAAGTCACATAACACCTAAGAGAGGTAGGCCGAAAGGATCGGTCTCCAAGTTACTGGGTAGCCCCATAACACCTAACAGAGGTAGGCCGAAAGGATCGGTCTCCAAGTTACTGGGTAGCCCCATAACACCTAACAGAGGTAGGCCGAAAGGATCGGTCTCCAAGTTACTGGGTAGCCCCATAACACCTAAGAGAGGTAGACCTAAAGGATCAGTGTTTACACAACGCAAGATACTGAAGGCGACGGGCGAGCCGCCGCGAGGCCAACCTCGAGAAGTGGTTGACCTCTCCCTTGATAAGCATGGCCGGCCCAGTATAGTTCAATTGAAAAGGAGAAGGCCAAAGAAAAGGGGAAGGCCAAAGAAGATACTAACACCCGATGAGGAAGAAGAGCTAAAGAAACTGGAAAGCCAACCAAGAAGACCATGCGGAAGGCCACGTATCTATCCCTGCGATGATTCTCCAGTCACTGAGCCCAGGGGAAAAGGTCCCCCACGGAAAAGGGGCCGTCCCCCTGGTGCACCAAACAAAGTTAAGAGGGGGGCAGAGCAGAATAAGAACAACAGTGAACCTCCAGTCAAACGCTCCTTCCACGCCAAAGAAAAAAGCGAGGAAGTGGGATTTCCACCAGTGGAAGAAAGTGATCAGGAAGATGAAACCGGGAGGGTGGATCAAGAAAGTGAAAAGTGGAAGGTGGAATATAGAGAAGACCCCAATAATCCAGTTACCCCCAGTGACCCCACTAGCTTTCTCTGGGCAAGTCACATAACACCTAACAGAGGTAGGCCGAAAGGATCGGCCTCCAAGTTACTGGGTAGCCCCATAACACCCAATAGAGGTAGGCCGAAAGGATCAGTCTCCAAGTTACTGGGTAGCCCCATAACACCCAATAGAGGTAGGCCGAAAGGATCAGTCTCCAAGTTACTGGGTAGCCCCATAACACCTAACAGAGGTAGGCCAAAAGGATCCGTCTCCAAGTTACTGGGTAGCCCCATAACACCTAACAGAGGTAGGCCAAAAGGATCAGTGTCCAAGTTACTGGGTAGCCCCATAACACCTAACAGAGGTAGGCCAAAAGGATCAGTGTCCAAGTTACTGGGTAGCCCCATAACACCTAACAGAGGTAGGCCGAAAGGATCAGTGTCCAAGTTACTGGGTAGCCCCATAACACCTAACAGAGGTAGGCCAAAAGGATCCGTCTCCAAGTTACTGGGTAGCCCCATAACACCCAATAGAGGTAGGCCGAAAGGATCAGTCTCCAAGTTACTGGGTAGCCCCATAACACCTAACAGAGGTAGGCCAAAAGGATCAGTGTCCAAGTTACTGGGTAGCCCCATAACACCTAACAGAGGTAGGCCGAAAGGATCAGTGTCCAAGTTACTGGGTAGCCCCATAACACCTAACAGAGGTAGGCCAAAAGGATCCGTCTCCAAGTTACTGGGTAGCCCCATAACACCCAATAGAGGTAGGCCGAAAGGATCAGTGTCCAAGTTACTGGGTAGCCCCATAACACCTAACAGAGGTAGGCCGAAAGGATCAGTATTTACACAACCCAAGATACTGAAGGTGATCGGCCTCGCGGCGGCTTGCCTACCCCGAAAACCAGATGACCCCTCCCCAAAGAAGAGTGGCCGACCCCGAAAAAAGAAGCGTGGCCCGCCCAGTAAAGTTGAATCGACAAGGAAGAGCCTAACACCCAAGGGGGAAGAGGATAGAAAACTGGAAAGCCAAGCAAGGCGGTCCCCCGGAAGGCCGCGTATCTATCCACGCATTGATTCTCCAGTCACTGAGCCCAGGGGAAGAGGTCGCCCACGGAAAAGGGGCCGTCCCCCTGGTGCAGCAAACAAAGTTaagaggggggcagagcaggaTAAGGACAACGGTGAACCTCCAGTCAAATGCAACTTTCACTCCAAAGACAAAACAGAGGAAGCAGGATTTCCACCAGTAGAAGAAAGTGATCAGGAAGATGAAACGGGGAGGGTGGATGAAGAAAGTGAAACGGGGAAGAATATAGAGAAGTCACCACAAAGCCAGTTACCCCCAGTGACTGTAATAGCTTTATCGGTGCCATAAGCAGGATAATGTTTGGCGACAGCTCAGCCAGCGACGGTACCCCTTTATCTAGTTTGTAAAAATGTGTGTGCCATTATAGCCTGATTTTTGATAGAAAACTACATGATCAGATGAGGGTGGCCTGTTAGGGTGATCACTGTCATGAACATAtacagaaaaaagaaaaaaaaaacgcaGCTTGTAAAGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437161 lncRNA upstream 10416 34785005 ~ 34786316 (+) True G2131472
TU2437151 lncRNA upstream 22596 34770922 ~ 34774136 (+) True G2131462
TU2437033 lncRNA upstream 47644 34742654 ~ 34749088 (+) True G2131387
TU2437112 lncRNA upstream 57543 34735325 ~ 34739189 (+) True G2131427
TU2437121 lncRNA upstream 72519 34723922 ~ 34724213 (+) True G2131435
TU2437177 lncRNA downstream 8392 34811977 ~ 34814689 (+) False LOC110509077
TU2437178 lncRNA downstream 8392 34811977 ~ 34814689 (+) True LOC110509077
TU2437203 lncRNA downstream 41713 34845298 ~ 34846409 (+) False G2131510
TU2437204 lncRNA downstream 41713 34845298 ~ 34846409 (+) True G2131510
TU2437231 lncRNA downstream 100210 34903795 ~ 34904100 (+) True G2131536
XM_021590027.2 mRNA upstream 27404 34766774 ~ 34769328 (+) True LOC110509070
XM_021590024.2 mRNA upstream 96501 34692295 ~ 34700231 (+) True LOC110509067
XM_021588662.2 mRNA upstream 142383 34653129 ~ 34654349 (+) True LOC110508234
XM_021590020.2 mRNA upstream 144210 34648851 ~ 34652522 (+) False fbxo36b
XM_036966931.1 mRNA upstream 144210 34648851 ~ 34652522 (+) True fbxo36b
XR_002471398.2 mRNA downstream 8309 34811894 ~ 34814719 (+) False LOC110509077
XR_002471397.2 mRNA downstream 8310 34811895 ~ 34814719 (+) False LOC110509077
XM_036966162.1 mRNA downstream 21384 34824969 ~ 34867323 (+) False LOC110509073
XM_036966164.1 mRNA downstream 21386 34824971 ~ 34867323 (+) False LOC110509073
XM_036966160.1 mRNA downstream 21387 34824972 ~ 34867323 (+) False LOC110509073
TU2437109 other upstream 13314 34702206 ~ 34783418 (+) True G2131426
TU2437076 other upstream 109092 34687271 ~ 34687640 (+) True G2131416
TU2437020 other upstream 191779 34603485 ~ 34604953 (+) True G2131383
TU2436600 other upstream 422722 34370861 ~ 34374010 (+) True LOC110508236
TU2436311 other upstream 727638 34038792 ~ 34069094 (+) False G2130749
TU2437711 other downstream 288114 35091699 ~ 35093034 (+) True G2131933
TU2438124 other downstream 896261 35699846 ~ 35700235 (+) True G2132291
TU2438299 other downstream 1169854 35973439 ~ 35975132 (+) True LOC110508289
TU2438402 other downstream 1535509 36339094 ~ 36364994 (+) True G2132519
TU2438499 other downstream 1561971 36365556 ~ 36369967 (+) True G2132611

Expression Profile