RNA id: TCONS_00055470


Basic Information

Item Value
RNA id TCONS_00055470
length 1899
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_028599
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12718965 ~ 12725513 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAATTTGTCAAAATGGCCGATCTGATGAACAGCGACGTGTTCCTGGCCTTCTGCACGTATGCCACTATCGTCATCCTCAAAATGATGTTCATGGCTCCTCTGACCGGATACTTCAGGTTTACTAGAAAGGCCTTTTCAAACTGGGAGGACACTGCAATGAGCAAAAATCCAGAGGCGCGAAAGAAGATGCTTCAGACCAATCCCGACGTAGAGCGTGTCCGAAGGTGCCATCTGAATGATCTGGAGAACATCATTCCCTTTGTGGTGATCGGTCTTCTGTATGCACTGACCGGTCCAGATCTCTCCACAGCTCTGCTGCACTTCCGGGTGTTTGTAGGCTCTCGTTTCATCCACACCGCGTCATACGTGCTGGCTCTTCCTCAGCCCAGCAGGGGTCTGTCCTGGGTGGTGGGAATGATCACAACCTTCTCCATGGCCTACAGAGTGCTCACCACAGCTCTCTATCTGTAAAGATGCCATTGCATTGCAGTATGCCGCAGAATGGTAGAGGccagttttgtattttttgattttattggCTTTATACTTTCTTATTTCACTCTAGTGTATGCAATTGATAATAAAATCTGTGAACATTCAACTGCATTTTCAATTAATATACAGGTATTTGGAAAGAAGCCGCTGTTGTAATGTCAGTTTCTTCTATCAAATGTTTGTTATCAGTCAACAGGTCATTGTCACCATGACTCGGCGTTAAACTGACGTTGCTATCTGTGTTTTTTTAGGAGGCATTCCAAGTGCTCAGACCTGCCTTTCTGTAAAATTTGAACGGGATCATTTCGTTGCATAATTTAGTACTTTACAGAATTTTTAGCAACATCTATCATAGTCTTGTTGGCTTTTCCTAAGGGTGCGCAGAACAGATTGGGTCACTGATTTCTAAATCAAGTCAAAGTTTATTCATGATAATGCAGCACATTCCGCGCTGTTTCGTAAGCTGTTTCATATCTTCAATGAAGTTGCATTCTGTTAATTAGACTGTAATATGGCACAATGCCATTACTCATCATGCCCAAAAGAACACTGTGTGTGTCTTAGGAAcaaccaataataacttgacctcttgttgatcatttggtatcagaagtggctcatatgaaaggcaaaggcctctagattatgcttattttaccaaaataaaatatgatcgaGTCTcgatttttaatgattaaatttggacagtaaggtctgagtttgcttagacaaaagtaatgtccagaacagaaataatgtacagtatagaatataaagtcatggtgcagtggaaattttttttttttataaatcttgtatgaatcccatgagcttggacgactgcatccatacatctctgcaacgactcaaataacaataaaaacgtCATGTGGAATggaaaagaaagcgttcttgcaggactcccagagttcatcaagattctttggattaattTTCACAGCCTCCTTCTTTTAACTCCAGACATGCTTAATATTGTTCATGTTGGGTGACTggcctggccaatcctggagcaccagaccttctttgcttttaggaactttgatgtggaggctgaagtatgagaaggagcgctatcctgcagaatttgccctctcctgtgttttgtaatgtaatgggcaacacaaacGTCTTGACAccgcaggctgttgatgttgccatccactctgcagatctctcgcatgcccctatactgaatgtaaccccaaaccatgatttttccttcaccaaacttgactgatttctgtgagagtcttgggtccatgctggttccagtaggtcttctgcactATTTGTGACGACtgagatgcagtttaacagatgattcatctgaaaaataatgaataataaataataaaataataataataaacagcttaaagtg

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004364 glutathione transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-59 Predicted to enable glutathione transferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Is expressed in brain; gill; hematopoietic system; liver; and pleuroperitoneal region. Orthologous to human MGST1 (microsomal glutathione S-transferase 1).

Ensembl:

ensembl_id ENSDART00000185639

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055467 lncRNA downstream 1215 12715922 ~ 12717752 (-) False XLOC_028598
TCONS_00055459 lncRNA downstream 395808 12321818 ~ 12323159 (-) True XLOC_028594
TCONS_00058124 lncRNA downstream 421517 12288765 ~ 12297450 (-) True XLOC_028593
TCONS_00058123 lncRNA downstream 428424 12288765 ~ 12290543 (-) False XLOC_028593
TCONS_00058122 lncRNA downstream 428646 12288765 ~ 12290321 (-) False XLOC_028593
TCONS_00057332 lncRNA upstream 17777 12741362 ~ 12742600 (-) False XLOC_028600
TCONS_00058125 lncRNA upstream 17816 12741401 ~ 12744353 (-) True XLOC_028600
TCONS_00055482 lncRNA upstream 70150 12793735 ~ 12794182 (-) True XLOC_028603
TCONS_00055485 lncRNA upstream 150397 12873982 ~ 12883327 (-) False XLOC_028605
TCONS_00055484 lncRNA upstream 150397 12873982 ~ 12883327 (-) True XLOC_028605
TCONS_00055466 mRNA downstream 600 12715695 ~ 12718367 (-) False XLOC_028598
TCONS_00055468 mRNA downstream 864 12716227 ~ 12718103 (-) True XLOC_028598
TCONS_00055461 mRNA downstream 241689 12401146 ~ 12477278 (-) False XLOC_028596
TCONS_00055462 mRNA downstream 241689 12412695 ~ 12477278 (-) False XLOC_028596
TCONS_00055463 mRNA downstream 241743 12413205 ~ 12477224 (-) False XLOC_028596
TCONS_00055471 mRNA upstream 31551 12755136 ~ 12766418 (-) True XLOC_028601
TCONS_00055472 mRNA upstream 46366 12769951 ~ 12781182 (-) False XLOC_028602
TCONS_00055474 mRNA upstream 58549 12782134 ~ 12790971 (-) False XLOC_028603
TCONS_00055475 mRNA upstream 62379 12785964 ~ 12790886 (-) False XLOC_028603
TCONS_00055477 mRNA upstream 62379 12785964 ~ 12794045 (-) False XLOC_028603
TCONS_00055465 other downstream 123163 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055464 other downstream 285951 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055457 other downstream 432901 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055433 other downstream 1110684 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 1112112 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055473 other upstream 54124 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 183396 12906981 ~ 12914170 (-) True XLOC_028606
TCONS_00055495 other upstream 251631 12975216 ~ 12978899 (-) True XLOC_028608
TCONS_00055502 other upstream 484526 13208111 ~ 13255813 (-) True XLOC_028612
TCONS_00055510 other upstream 840082 13563667 ~ 13567275 (-) True XLOC_028621

Expression Profile

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